| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,981,512 – 22,981,672 |
| Length | 160 |
| Max. P | 0.652041 |
| Location | 22,981,512 – 22,981,632 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.28 |
| Mean single sequence MFE | -44.90 |
| Consensus MFE | -43.09 |
| Energy contribution | -43.02 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.96 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22981512 120 + 27905053 UCUCGUCGGGCUCUCCCUUCCCACCGGUCCAGAUCGGUGACAAGACCUUCUACCCGGGCCAGGGCAACAAUGCCUACAUCUUCCCAGGCGUUGGCUUGGGCGUGAUCUGCACGGGUACUC ....((((((....)))....(((((((....)))))))....)))....((((((.((..(((((....)))))..(((..(((((((....)))))))...)))..)).))))))... ( -46.40) >DroSec_CAF1 12423 120 + 1 UCUCGUCGGGCUCUCCCUUCCCACCGGUCCAGAUUGGUGACAAGACCUUCUACCCUGGCCAGGGUAACAACGCCUACAUCUUCCCAGGUGUUGGCUUGGGCGUGAUCUGCACGGGUACUC .(((((((((.((.(((....(((((((....))))))).((((......((((((....)))))).((((((((..........)))))))).)))))).).)))))).)))))..... ( -42.00) >DroEre_CAF1 6359 120 + 1 UCUCGUCGGGCUCUCCCUUCCCGCCGGUCCAGAUCGGUGACAAGACCUUCUACCCGGGCCAGGGCAACAACGCCUACAUCUUCCCUGGUGUCGGCUUGGGCGUGAUCUGCACGGGCACUC .......(((....))).....(((.((.(((((((((......))).....((((((((.((((......))))(((((......))))).))))))))...)))))).)).))).... ( -48.30) >DroYak_CAF1 12999 120 + 1 UCUCGUCGGGCUCUCCCUUCCCGCCGGUCCAGAUCGGUGACAAGACCUUCUACCCCGGCCAGGGCAACAACGCCUACAUCUUCCCAGGUGUCGGCUUGGGCGUGAUCUGCACGGGUACAC .......(((....))).....(((.((.(((((((((......))).....(((.((((.((((......))))((((((....)))))).)))).)))...)))))).)).))).... ( -42.90) >consensus UCUCGUCGGGCUCUCCCUUCCCACCGGUCCAGAUCGGUGACAAGACCUUCUACCCGGGCCAGGGCAACAACGCCUACAUCUUCCCAGGUGUCGGCUUGGGCGUGAUCUGCACGGGUACUC .......(((....))).....(((.((.(((((((((......))).....((((((((.((((......))))(((((......))))).))))))))...)))))).)).))).... (-43.09 = -43.02 + -0.06)
| Location | 22,981,552 – 22,981,672 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.14 |
| Mean single sequence MFE | -40.35 |
| Consensus MFE | -35.61 |
| Energy contribution | -36.05 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22981552 120 + 27905053 CAAGACCUUCUACCCGGGCCAGGGCAACAAUGCCUACAUCUUCCCAGGCGUUGGCUUGGGCGUGAUCUGCACGGGUACUCACCACAUACCCGACGAAAUGUUCCUCAUCGCCGCCCAGGA ............((.((((((((.((((...((((..........)))))))).))))(((((((...(((((((((.........))))))......)))...))).)))))))).)). ( -41.00) >DroSec_CAF1 12463 120 + 1 CAAGACCUUCUACCCUGGCCAGGGUAACAACGCCUACAUCUUCCCAGGUGUUGGCUUGGGCGUGAUCUGCACGGGUACUCACCACAUACCCGACGAAAUGUUCCUCAUCGCCGCCCAGGA ..........((((((....)))))).((((((((..........)))))))).((((((((((((.....((((((.........))))))..((........)))))).)))))))). ( -42.80) >DroEre_CAF1 6399 120 + 1 CAAGACCUUCUACCCGGGCCAGGGCAACAACGCCUACAUCUUCCCUGGUGUCGGCUUGGGCGUGAUCUGCACGGGCACUCACCACAUACCCGACGAAAUGUUCCUGAUCGCCGCCCAGGA .............(((((((((((..................))))))).))))(((((((((((((.(((((((.............))))......)))....))))).)))))))). ( -39.49) >DroYak_CAF1 13039 120 + 1 CAAGACCUUCUACCCCGGCCAGGGCAACAACGCCUACAUCUUCCCAGGUGUCGGCUUGGGCGUGAUCUGCACGGGUACACAUCACAUACCCGACGAAAUGUUCCUUAUCGCCGCCCAGGA ..................((.((((..(((.(((.((((((....)))))).))))))(((((((...(((((((((.........))))))......)))...))).)))))))).)). ( -38.10) >consensus CAAGACCUUCUACCCGGGCCAGGGCAACAACGCCUACAUCUUCCCAGGUGUCGGCUUGGGCGUGAUCUGCACGGGUACUCACCACAUACCCGACGAAAUGUUCCUCAUCGCCGCCCAGGA ..................((.((((..(((.(((.(((((......))))).))))))(((((((...(((((((((.........))))))......)))...))).)))))))).)). (-35.61 = -36.05 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:55 2006