Locus 8587

Sequence ID 3R_DroMel_CAF1
Location 22,963,357 – 22,963,469
Length 112
Max. P 0.519584
window13792

overview

Window 2

Location 22,963,357 – 22,963,469
Length 112
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 83.14
Mean single sequence MFE -27.50
Consensus MFE -21.65
Energy contribution -22.43
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.79
SVM decision value -0.03
SVM RNA-class probability 0.519584
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22963357 112 + 27905053
GUCAACAAUUUAAUUCAUAAUUUGAAUAGUGAUUAGAAAUGACAAAUGUCUGUCGUGCAGUCAGU-AGUAGUAUCUCGAAGUUGCCUUCAGGCGACUUC------CAUCAGAAUGCUGU
.............((((.....))))((.(((((....((((((......))))))..))))).)-).((((((((.(((((((((....)))))))))------....)).)))))). ( -29.20)
>DroSim_CAF1 17133 113 + 1
GUCAACAUUUUAAUUCAUAAUUUGAAUAGUGAUUAGAAAUGACAAAUGUCUGUCGUGCAGUCAGUUAGUAGUAUCUCAGAGUUGCCUUCAGGCGACUUC------CAUCAGAAUGCUGU
...(((......(((((.....)))))..(((((....((((((......))))))..))))))))..((((((((..((((((((....)))))))).------....)).)))))). ( -26.40)
>DroEre_CAF1 16183 102 + 1
GUCAA-------------AAUUUGAAUAGUGAUUAGAAAUGACAAAUGCCUGUCGUGCAGUCAG----UAGUAUCUCGAUGUCGCCUUCAGGCUACUUCAGGCUACAUCAGAAUGCUGU
.....-------------...........(((((....((((((......))))))..))))).----((((((((.(((((.((((..((....))..)))).))))))).)))))). ( -26.90)
>consensus
GUCAACA_UUUAAUUCAUAAUUUGAAUAGUGAUUAGAAAUGACAAAUGUCUGUCGUGCAGUCAGU_AGUAGUAUCUCGAAGUUGCCUUCAGGCGACUUC______CAUCAGAAUGCUGU
....................(((((....(((((....((((((......))))))..)))))..............(((((((((....)))))))))........)))))....... (-21.65 = -22.43 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:43 2006