Locus 8586

Sequence ID 3R_DroMel_CAF1
Location 22,960,993 – 22,961,089
Length 96
Max. P 0.500000
window13791

overview

Window 1

Location 22,960,993 – 22,961,089
Length 96
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.99
Mean single sequence MFE -35.53
Consensus MFE -23.59
Energy contribution -25.78
Covariance contribution 2.20
Combinations/Pair 1.04
Mean z-score -1.45
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22960993 96 + 27905053
CCGGCGGUGUCUGGCGGGCGUAAUGCAAUCCGCAAUUGAAACCGCCGCCAUUCGAAAGUAGGAGAGUGGCUGCCAAGU----CCACAGCUGUGAACUGAC
..((((((.((..((((((.....))...))))....)).))))))(((((((..........))))))).....(((----.(((....))).)))... ( -35.50)
>DroSec_CAF1 13519 96 + 1
CCGGCGGUGUCUGGCGGGCGUAAUGCAAUCCGCAAUUGAAACCGCCGCCAUUCGAAAGUAGGAGAGUGGCUGCCGAGU----CCACAGCUGCGGUCCAAC
..((((((.((..((((((.....))...))))....)).))))))(((((((..........))))))).(((((((----.....))).))))..... ( -37.10)
>DroSim_CAF1 14138 96 + 1
CCGGCGGUGUCUGGCGGGCGUAAUGCAAUCCGCAAUUGAAACCGCCGCCAUUCGAAAGUAGGAGAGUGGCUGCCGAGU----CCACAGCUGCGGUCCGAC
..((((((.((..((((((.....))...))))....)).))))))(((((((..........))))))).(((((((----.....))).))))..... ( -37.10)
>DroEre_CAF1 13788 96 + 1
CCGGCGGUGUCUGGCGGGCGUAAUGCAAUCCGCAAUUGAAACCGCCGCCAUUCGAAAGUAGGAGAGUGGCUUCCAAGU----CCACAGCUGCGGACUGAC
..((((((.((..((((((.....))...))))....)).))))))(((((((..........))))))).....(((----((.(....).)))))... ( -38.40)
>DroYak_CAF1 14018 96 + 1
CCGGCGGUGUCUAGCGGGCGUAAUGCAAUCCGCUAUUGAAACCGCCGCCAUUCGAAAGUAGGAGAGUGGCUUCCAAGU----CCACAGCUGUGGAGUGAC
..((((((.((((((((((.....))...))))))..)).))))))(((((((..........)))))))...((..(----((((....))))).)).. ( -40.00)
>DroPer_CAF1 17258 81 + 1
-------------------GCAAUGCAAUCGACAAUUGAAGCUGCUGCCAUUCGAAAGUAGGAGAGUGGCAACGAGGCAUCGAUGCAGCUCCGGCGCUAC
-------------------((....((((.....)))).((((((((((((((..........)))))))).(((....)))..))))))...))..... ( -25.10)
>consensus
CCGGCGGUGUCUGGCGGGCGUAAUGCAAUCCGCAAUUGAAACCGCCGCCAUUCGAAAGUAGGAGAGUGGCUGCCAAGU____CCACAGCUGCGGACCGAC
.((((.(((...(((((...((((((.....)).))))...)))))(((((((..........))))))).............))).))))......... (-23.59 = -25.78 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:42 2006