Locus 8584

Sequence ID 3R_DroMel_CAF1
Location 22,959,053 – 22,959,145
Length 92
Max. P 0.996785
window13789

overview

Window 9

Location 22,959,053 – 22,959,145
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 72.38
Mean single sequence MFE -24.69
Consensus MFE -12.16
Energy contribution -13.48
Covariance contribution 1.32
Combinations/Pair 1.38
Mean z-score -2.50
Structure conservation index 0.49
SVM decision value 2.75
SVM RNA-class probability 0.996785
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22959053 92 - 27905053
GGGAAUUGAAAAGGGAAAAUUCGUUAUAGGCAUUUAAUACCUAAAAGGAGUUUGUUUAUCAUGCGAAUGG----CUGAUUAGUCAGUUCCCAGAAC
(((((((((....((...((((((.(((((((...(((.((.....)).))))))))))...))))))..----))......)))))))))..... ( -26.00)
>DroSec_CAF1 11605 87 - 1
GGGAAUUGAGAAAGGGAAAUUCGUUUUAGGCAUUUGAUACCUU-----UGUUUGUUUAUCAUGCGAAUGG----CUGAUUAGUCAGUUCCCAGAAC
(((((((((.((..((..((((((..((((((..(((.....)-----))..))))))....))))))..----))..))..)))))))))..... ( -26.20)
>DroSim_CAF1 12191 92 - 1
GGGAAUUGAAAAAGGGAAAUUCGUUUUAGGCAUUUGAUACCUCAAAGGAGUUUGUUUAUCAUGCGAAUGG----CUGAUUAGUCAGUUCCCAGAAC
(((((((((..((.((..((((((..((((((...(((.((.....)).)))))))))....))))))..----))..))..)))))))))..... ( -27.70)
>DroEre_CAF1 11721 87 - 1
GUAGAUCGAAAAU-GUAAACUCG-UAUGCGCAU---ACGCCUUAAAGGCGUUGGUUAGUCAUACGAAUGG----CUGAUUAACCGAUUCCCAGAAC
(..(((((.....-........(-(((....))---))(((.....)))(((((((((((((....))))----))))))))))))))..)..... ( -25.50)
>DroYak_CAF1 11956 81 - 1
GUAUAUCGC---------------UCUGCGCAUUUAAUACCUUAAAGGUGUUGGUUAGUCAUACGAAUGAUUACCUGAUUAGCCGAUUCCUAGAAC
.....((((---------------.....))..............(((.((((((((((((..............)))))))))))).))).)).. ( -18.04)
>consensus
GGGAAUUGAAAAAGGGAAAUUCGUUAUAGGCAUUUAAUACCUUAAAGGAGUUUGUUUAUCAUGCGAAUGG____CUGAUUAGUCAGUUCCCAGAAC
(((((((((.................(((((....((((((.....)))))).)))))((((....))))............)))))))))..... (-12.16 = -13.48 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:40 2006