Locus 8583

Sequence ID 3R_DroMel_CAF1
Location 22,956,065 – 22,956,160
Length 95
Max. P 0.507423
window13788

overview

Window 8

Location 22,956,065 – 22,956,160
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.31
Mean single sequence MFE -21.20
Consensus MFE -12.87
Energy contribution -13.65
Covariance contribution 0.78
Combinations/Pair 1.22
Mean z-score -1.53
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.507423
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22956065 95 - 27905053
----CAAUAUUCUGCAACGAUUCAUCGAAUCGCGUGGGGUGAUUCAUUCAUAACCACUCACUUGCAGUGGCUC---AUAUGGAAUCAUUGUUACUUUUUCAU
----.........((((.(((((...(((((((.....)))))))...((((.((((((....).)))))...---.))))))))).))))........... ( -23.20)
>DroSec_CAF1 8584 95 - 1
----CAAUAUUCUGCAGCGAUUCAUCGAAUCGCGUGGGGUGAUUCAUUCAUAACCACUCACUUGCAGUGGCUC---AUAUGGAAUAAUUGUUACUUUUUCAU
----(((((((((...(((((((...)))))))(((((((((.....))))..((((((....).))))))))---))..))))).))))............ ( -25.20)
>DroSim_CAF1 9181 95 - 1
----CAAUAUUCUGCAGCGAUUCAUCGAAUCGCGUGGGGUGAUUCAUUCAUAACCACUCACUUGCAGUGGCUC---AUAUGGAAUCAUUGUUACUUUUUCAU
----((((((((..(.(((((((...))))))))..))))(((((........((((((....).)))))...---.....)))))))))............ ( -25.39)
>DroEre_CAF1 8585 99 - 1
AAUACGAUACUGUGCAUCGAUUCAUCGAAUCGCGUGGGGUGAUUCAUUCAUAACCACUCACUUGCAAUGGCUC---AUAUGGAAUCAUUAUUACUUUUUCAU
.....((....(((((.((((((...)))))).((((.((((.....))))..)))).....)))((((..((---.....))..))))...))....)).. ( -19.30)
>DroYak_CAF1 8786 99 - 1
AGUACGAUAUUCUGCAUUGAUUCAUCGAAUCGCGUGGGGUGAUUCAUUCAUAACCACUCACUUGCAAUGGCUC---AUAUGGAAUCAUAGUUACUUUUUCAU
(((((.......((((..(((((...)))))(.((((.((((.....))))..)))).)...))))(((..((---.....))..))).).))))....... ( -18.60)
>DroPer_CAF1 10267 85 - 1
AAUACAAUUUUCUGCAUCGAUUCAUCGAUUUUCUGUGUGUGAAUCAUUCAUAGACAUUCACCUGCAACACACCGGAAUAUGUAGU-----------------
..((((...(((((.(((((....)))))....(((.(((((.....))))).)))................)))))..))))..----------------- ( -15.50)
>consensus
____CAAUAUUCUGCAUCGAUUCAUCGAAUCGCGUGGGGUGAUUCAUUCAUAACCACUCACUUGCAAUGGCUC___AUAUGGAAUCAUUGUUACUUUUUCAU
..................(((((...(((((((.....)))))))........((((((....).)))))...........)))))................ (-12.87 = -13.65 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:39 2006