Locus 8582

Sequence ID 3R_DroMel_CAF1
Location 22,953,204 – 22,953,296
Length 92
Max. P 0.611640
window13787

overview

Window 7

Location 22,953,204 – 22,953,296
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 80.70
Mean single sequence MFE -23.53
Consensus MFE -13.69
Energy contribution -15.05
Covariance contribution 1.36
Combinations/Pair 1.22
Mean z-score -1.88
Structure conservation index 0.58
SVM decision value 0.16
SVM RNA-class probability 0.611640
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22953204 92 - 27905053
CAGCGAAACAACAACCAUAAUAGCAACAGCAACAGUAGCACUAAUCCAACAGUGGAGGCAGCUACGCUGCGUUCUCCGUCCAUGUUGUCGCU
.(((((..(((((........((.(((.(((...(((((.....((((....))))....)))))..)))))))).......)))))))))) ( -24.26)
>DroPse_CAF1 6663 80 - 1
CAGCGGAAUAACAACAACAAU-----CAGC-AGAAUAGCAACGAGUCAACGAC----GUUGC--CGCCACGCUCUCCGUCCAUGUUGUCGCU
.((((..((((((...((...-----.(((-......((((((.(....)..)----)))))--......)))....))...)))))))))) ( -16.70)
>DroSec_CAF1 5748 92 - 1
CAGCGAAACAACAACCAUAAUAGCAACAGCAACAGUAGCUCUAAUCCAACAGUGGAGGGAGCUACGCUGCGCUCUCCGUCCAUGUUGUCGCU
.(((((..(((((........(((..((((....((((((((..((((....)))).)))))))))))).))).........)))))))))) ( -31.23)
>DroEre_CAF1 5738 92 - 1
CAGCGAAACAACAAUCAUAAUAGCAACAGCAACAGUAGCACUAAUCCAACAGUGGAGGGAGCUACGCUGCGCUCUCCGUCCAUGUUGUCGCU
.(((((..(((((........(((..((((....(((((.((..((((....)))).)).))))))))).))).........)))))))))) ( -26.33)
>DroYak_CAF1 5852 92 - 1
CAGCGAAACAACAACCAUAAUAGCAACAGCAACAGUAGCACUAAUCCAACAGUGGAGGGAGCUACGCUGCGCUCUCCGUCCAUGUUGUCGCU
.(((((..(((((........(((..((((....(((((.((..((((....)))).)).))))))))).))).........)))))))))) ( -26.33)
>DroPer_CAF1 6696 80 - 1
CAGCGGAAUAACAACAACAAU-----CAGC-AGAAUAGCAACGAAUCAACGAC----GUUGC--CGCCACGCUCUCCGUCCAUGUUAUCGCU
.((((..((((((...((...-----.(((-......((((((.........)----)))))--......)))....))...)))))))))) ( -16.30)
>consensus
CAGCGAAACAACAACCAUAAUAGCAACAGCAACAGUAGCACUAAUCCAACAGUGGAGGGAGCUACGCUGCGCUCUCCGUCCAUGUUGUCGCU
.(((((..(((((.............((((....(((((.((...((......))..)).))))))))).............)))))))))) (-13.69 = -15.05 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:38 2006