Locus 8581

Sequence ID 3R_DroMel_CAF1
Location 22,946,795 – 22,946,915
Length 120
Max. P 0.777843
window13786

overview

Window 6

Location 22,946,795 – 22,946,915
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.67
Mean single sequence MFE -43.15
Consensus MFE -31.69
Energy contribution -31.00
Covariance contribution -0.69
Combinations/Pair 1.57
Mean z-score -1.45
Structure conservation index 0.73
SVM decision value 0.55
SVM RNA-class probability 0.777843
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22946795 120 - 27905053
UAGAGCUGUUGGGCUUCAUUGAGGGCCCGUUCCUGCUCCGAGGCGGCAACGUUCUGCUGGAGCAACUGCUUUCGGAGGAUGCUAAUGCGUCCGAGCAGGUCCAUUUUUUCUGGAUCCUUG
(((((.....((((((......))))))(..(((((((((..(((....)))..))(((((((....)).))))).((((((....)))))))))))))..).....)))))........ ( -47.50)
>DroVir_CAF1 2322 120 - 1
UAGAGCUGUUGGGCCUCGGACAAUGCCCGCUCCUGCUCCAGGGCAGCCACAUUCUGGCUGAGCAGCUGUUUGCGCAGGAUGUGUAUGCGUUCGAGUAAAUCCAUUUUUUCCGGAUCCUUG
..((((....((((..........)))))))).(((((.((.(((..(((((((((((.((((....)))))).)))))))))..))).)).))))).((((.........))))..... ( -40.70)
>DroGri_CAF1 2386 120 - 1
UAGAGUUGUUGGGCCUCAGUCAGGGCACGCUCCUGUUCCAAAGCAGCCACGUUCUGGCCGAGCAGCUGUUUGCGCAGGAUGUGUAUGCGUUCGAGCAGAUCCAUUUUCUCGGGAUCCUUG
..(((....(((((((......))))......((((((....(((..(((((((((((.((((....)))))).)))))))))..)))....))))))..)))....))).......... ( -42.20)
>DroYak_CAF1 2287 120 - 1
UAGAGCUGUUGGGCUUCAUUCAGGGCACGUUCCUGCUCCAAGGCGGCUACAUUUUGCUGAAGCAAUUGCUUUCGCAGGAUACUUAUGCGCCCGAGAAGAUCCAUUUUUUCUGGAUCCUUG
..(((((....)))))..(((.((((.(((..(((((....)))))..))(((((((.(((((....))))).)))))))......).))))..)))((((((.......)))))).... ( -39.70)
>DroMoj_CAF1 2298 120 - 1
UAGAGCUGCUGGGCCUCAUUGAGCGCCCGCUCCUGCUCCAGUGCGGCCACGUUCUGGCUGAGCAGCUGUUUGCGCAGCACGUGAAUGCGCUCGAGCAGAUCCAUUUUCUCGGGAUCCUUG
..((((....(((((((...))).)))))))).(((((.((((((..(((((....((((.((((....)))).)))))))))..)))))).)))))(((((.........))))).... ( -51.50)
>DroAna_CAF1 2268 120 - 1
UACAACUGCUGAGCUUCGUUCAAAGCUCGUUCCUGCUCCAAAGCUGCCACAUUUUGUUGCAGCAACUGCUUGCGCAGGAUGGCGAUGCGUCCUAGCAGGUCCAUUUUCUCCGGAUCCUUU
.....(((..((((((......))))))(..((((((.....(((((.((.....)).)))))....((....))((((((......))))))))))))..)........)))....... ( -37.30)
>consensus
UAGAGCUGUUGGGCCUCAUUCAGGGCCCGCUCCUGCUCCAAGGCGGCCACAUUCUGGCGGAGCAACUGCUUGCGCAGGAUGUGUAUGCGUCCGAGCAGAUCCAUUUUCUCCGGAUCCUUG
..((((....((((((......))))))))))((((((.((.(((....(((((((..(((((....)))))..)))))))....))).)).))))))((((.........))))..... (-31.69 = -31.00 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:37 2006