Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,902,115 – 2,902,216 |
Length | 101 |
Max. P | 0.559192 |
Location | 2,902,115 – 2,902,216 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.41 |
Mean single sequence MFE | -22.27 |
Consensus MFE | -12.05 |
Energy contribution | -11.42 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.30 |
Mean z-score | -1.75 |
Structure conservation index | 0.54 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2902115 101 + 27905053 -------------------UUAGUUUCUUAAUUGACCACUCUGACUAUUGGCACUUUAUAUCACCAAAGGACUUUAUUGUUUGAACUGUAGUCAAUGGUCAAUGCCCAAACGCACUUUUU -------------------...((((....((((((((...((((((((((............)))).((((......))))......)))))).))))))))....))))......... ( -21.50) >DroSec_CAF1 8842 97 + 1 -----------------------UUGCUUAAUUGACCAGUCUGACUAUUGGCACUUAUCAUCACCGACAGACUUUAUUGUUUAAACCAUGGUUAAUGGCCAAUGCCCAAACGCACUUUUU -----------------------.(((...(((((((((((((....((((............)))))))))((((.....))))...))))))))(((....))).....)))...... ( -18.90) >DroSim_CAF1 9953 101 + 1 -------------------UUAGUUGCUUAAUUGACCAGUCUGACUAUUGGCACUUAUCAUCAACAACAGACUUUAUUGUUUGAACCGUGGUCAAUGGCCAAUGCCCAAACGCACUUUUC -------------------..(((.((...(((((((((((........)))...............(((((......))))).....))))))))(((....))).....))))).... ( -22.60) >DroYak_CAF1 9879 116 + 1 UAGUCAAUAAACUAGAAAAUUA-UUGCAUUGCUUUCCACUCUGAUUGUUGGCUCUUAUCAUCGCCGACAGACUUUUUAGUUUAAACUGGAGUCAAUGG---GUGCUCAAACGCACUUUUU ((((......))))........-...(((((..(((((........((((((..........))))))(((((....)))))....))))).)))))(---((((......))))).... ( -26.10) >consensus ___________________UUA_UUGCUUAAUUGACCACUCUGACUAUUGGCACUUAUCAUCACCAACAGACUUUAUUGUUUAAACCGUAGUCAAUGGCCAAUGCCCAAACGCACUUUUU ..............................((((.(((...((((((((((............)))).((((......))))......)))))).))).))))((......))....... (-12.05 = -11.42 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:59 2006