Locus 8577

Sequence ID 3R_DroMel_CAF1
Location 22,940,929 – 22,941,034
Length 105
Max. P 0.833083
window13777

overview

Window 7

Location 22,940,929 – 22,941,034
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.07
Mean single sequence MFE -26.73
Consensus MFE -17.73
Energy contribution -17.79
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.91
Structure conservation index 0.66
SVM decision value 0.72
SVM RNA-class probability 0.833083
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22940929 105 - 27905053
GCGACAGAAGCGCGAAAACAAGAUUCUGUCGCAGUUUAAGGACAUGAUCCACUCAAAGCUGCAGGCCAAGGACAAGAAGUAA------AU--------CCUAAAGGAUAUUGUC-UUCAA
(((((((((...(........).)))))))))......((((((..((((.......((.....))..((((..........------.)--------)))...))))..))))-))... ( -28.40)
>DroSec_CAF1 2564 91 - 1
GCGCCAGAAGCGCGAAAACAAGAUUCUGUCGCAGUUUAAGGACAUGAUCCACACAAAGCUGCAGGCCAAGGACAAGAAG---------------------UA-A------UGUC-UUCAA
((((.....))))(((.(((...((((((((((((((..(((.....))).....)))))))........))).)))).---------------------..-.------))).-))).. ( -22.20)
>DroSim_CAF1 2580 94 - 1
GCGACAGAAGCGUGAAAACA-GAUUCUGUCGCAGUUUAAGGACAUGAUCCACUCAAAGCUCCAGGCCAAGGACAAGAAC-------------------GCUAAG------AGUCGUUCAA
(((((((((..((....)).-..))))))))).((((..(((.....))).......((.....))...))))..((((-------------------((....------.).))))).. ( -27.20)
>DroYak_CAF1 2587 118 - 1
GCGACAGAAGCGCGAAAACAAAAUUCUGUCGCAGUUCAAGGACAUGAUCCACUCGAAGCUGCAGGCCAAGGACAAGAAGUAGGAAAGCAUCAUACUAUGUU-AAGGAUAUUGUC-UUCAA
(((((((((..............)))))))))......((((((..((((.......((.....))....((((...((((.((.....)).)))).))))-..))))..))))-))... ( -29.14)
>consensus
GCGACAGAAGCGCGAAAACAAGAUUCUGUCGCAGUUUAAGGACAUGAUCCACUCAAAGCUGCAGGCCAAGGACAAGAAG___________________GCUAAA______UGUC_UUCAA
(((((((((..............))))))))).((((..(((.....))).......((.....))...))))............................................... (-17.73 = -17.79 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:28 2006