Locus 8576

Sequence ID 3R_DroMel_CAF1
Location 22,930,854 – 22,930,959
Length 105
Max. P 0.566819
window13776

overview

Window 6

Location 22,930,854 – 22,930,959
Length 105
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 91.63
Mean single sequence MFE -18.90
Consensus MFE -15.15
Energy contribution -15.27
Covariance contribution 0.13
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.80
SVM decision value 0.07
SVM RNA-class probability 0.566819
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22930854 105 - 27905053
UA-----AUAUACAUUACCACAAAUAAACAACUAAUUAGACUAAUUCAUCAAGCGACGAGCAGUGCAAACAAAAAUGUGUGCUCCAUCGACAUAUCGACCAGUUGUGCAG
..-----....................((((((........................(((((.((((........)))))))))..((((....))))..)))))).... ( -15.60)
>DroSec_CAF1 12510 105 - 1
UA-----AUAUACAUUACCACAAAUAAACAACUAAUUAGACUAAUUCAUCAAACGACGAGCAGUGCACACAAAAUUGUGCGCUCCAUCGACAUAUCGACCAGUUGUGCAG
..-----....................((((((.....((.....))......((((((..((((((((......))))))))...))).....)))...)))))).... ( -19.50)
>DroSim_CAF1 11166 105 - 1
UA-----AUAUACAUUACCACAAAUAAACAACUAAUUAGACUAAUUCAUCAAGCGACGAGCAGUGCACACAAAAUUGUGUGCUCCAUCGACAUAUCGACCAGUUGUGCAG
..-----....................((((((...................((.....)).(.(((((((....))))))).)..((((....))))..)))))).... ( -19.50)
>DroYak_CAF1 14828 110 - 1
UAAUAUAAUAAACGUUACUACAAAUAAACAACUAAUUAGACUAAUUCAUCAAUCGACGAGCAGUGCACACAAAAAUGUGUGCUUUAGUGACAUAUCGAGCAGUUGUGCAG
.............(((((((...................(((..(((.((....)).))).)))(((((((....)))))))..))))))).......(((....))).. ( -21.00)
>consensus
UA_____AUAUACAUUACCACAAAUAAACAACUAAUUAGACUAAUUCAUCAAGCGACGAGCAGUGCACACAAAAAUGUGUGCUCCAUCGACAUAUCGACCAGUUGUGCAG
...........................((((((.....((.....))......((((((..((((((((......))))))))...))).....)))...)))))).... (-15.15 = -15.27 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:27 2006