| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,906,994 – 22,907,087 |
| Length | 93 |
| Max. P | 0.639135 |
| Location | 22,906,994 – 22,907,087 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.75 |
| Mean single sequence MFE | -9.07 |
| Consensus MFE | -5.03 |
| Energy contribution | -6.03 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22906994 93 + 27905053 AAGCCAUGUGUAAAUACC--CAAACAAAAAAACACGCAAAUAUUUAAUUUGGUAAAUCUAAUGAAAU----CUCAUUGCAUACACACCUCGACA---ACAAC--- ......((((((......--.............((.(((((.....))))))).....((((((...----.))))))..))))))........---.....--- ( -10.80) >DroSec_CAF1 23949 96 + 1 AAGCCAAGUGUAAAUACC--CAAACGUAAAAACACGCAAAUAUUUAAUUUGGUAAAUCUAAUGAAAU----CUCAUUGCAUACACACCUCGACAACAACAAC--- ..(((((((.((((((..--....(((......)))....))))))))))))).....((((((...----.))))))........................--- ( -11.70) >DroSim_CAF1 24700 95 + 1 AAGCCAAGUGUAAAUACC--CAAACAUAAAAACACGCAAAUAUUUAAUUUGGUAAAUCUAAUGAAAU----CUCAUUGCAUACACACCUCAACA-CUACAAC--- .......(((((......--.............((.(((((.....))))))).....((((((...----.))))))..))))).........-.......--- ( -10.30) >DroEre_CAF1 53847 94 + 1 AAGCCAAGUGUAAAUACC--CAAACAUAAAAA--CGCAAAUAUUUAAUUUAGUCAAUCUAAUGAAAU----CUCAUUGCAUACACACCUCGACAACAACAAC--- .......(((((..((..--......))....--.((((..((((...((((.....))))..))))----....)))).))))).................--- ( -7.30) >DroMoj_CAF1 33049 88 + 1 --ACAAAAUGUAAAUAGAAA---ACG---CAA--AGCAAAUAUUUAAUU-GGUAAAUCUAAUAAAAUCUCACUCAUUGCAUACACAACAAAC---CAACACA--- --.....((((((..((...---..(---(..--.))....((((.(((-((.....))))).))))....))..))))))...........---.......--- ( -5.80) >DroPer_CAF1 33079 92 + 1 -AAACAAGUGUAAAUACA--G---CA-AAAAAC-----AAUAUUUAAUUUGGUAAAUCUAAUGAAAUCUCACUCAUUGCAUACACACCUCAACU-CAACCACCUG -......(((((......--.---..-.....(-----((........))).......((((((........))))))..))))).........-.......... ( -8.50) >consensus AAGCCAAGUGUAAAUACC__CAAACAUAAAAAC_CGCAAAUAUUUAAUUUGGUAAAUCUAAUGAAAU____CUCAUUGCAUACACACCUCAACA_CAACAAC___ .......(((((........................(((((.....))))).......((((((........))))))..))))).................... ( -5.03 = -6.03 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:25 2006