Locus 8572

Sequence ID 3R_DroMel_CAF1
Location 22,896,859 – 22,896,960
Length 101
Max. P 0.994891
window13771

overview

Window 1

Location 22,896,859 – 22,896,960
Length 101
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 73.01
Mean single sequence MFE -36.97
Consensus MFE -17.41
Energy contribution -18.07
Covariance contribution 0.66
Combinations/Pair 1.18
Mean z-score -2.68
Structure conservation index 0.47
SVM decision value 2.52
SVM RNA-class probability 0.994891
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22896859 101 + 27905053
AGAAGGUGCCGGCCAGCACUUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGGCCAAAGCUCGGCAUCAAAGCUCGCGGAGCACAACUGCUCUGCU------CUCGGCA
......((((((..(((((((.(((((......)))))))))((((((((((....))))))))))...))).((((((((....)))))))).------.)))))) ( -47.10)
>DroSec_CAF1 14069 93 + 1
------UGCCGGCCAACAUCUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGGCCAAAGCUCGGCUUCAAAGCUCGCGGAGCACACCUGCUCUGCU--------CCGCA
------...((((((((....))))..)))).........((((.(((((((....)))))))..........((((((((....)))))))).--------)))). ( -37.80)
>DroSim_CAF1 14628 93 + 1
------UGCCGGCCAACACCUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGGCCAAAGCUCGGCUUCAAAGCUCGCGGAGCACACCUGCUCUGCU--------CGGCA
------.((((((...(((...(((((......)))))..)))..(((((((....)))))))......))..((((((((....)))))))).--------)))). ( -41.00)
>DroEre_CAF1 43742 89 + 1
------UGCCGGCCAACACCUGUUGCUGCUGAAAGUAAAAGUGCUGCCGGA-CAAAGCUCGCCGGCAAAGCUCUCAGAUCGCACUUGCUC---U--------CGGCA
------....(((.(((....))))))(((((.((((..(((((((((((.-(.......)))))))..(.((...)).)))))))))).---)--------)))). ( -29.00)
>DroYak_CAF1 14529 78 + 1
------UGCCGGCCAACACCUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGG-CAAAGCUCGGCAUCAAAGCUCUCGG----CAC------------------CAACA
------....((......)).((((.((((((.(((.....((((((((((-(...)))))))))))..))).))))----)).------------------)))). ( -34.10)
>DroPer_CAF1 22297 96 + 1
------CGUAUGCGAUCAGCUGUGGCCGCUGAAAGUAAAAGUGAAGCGUG-----AGCUUUUUCCCAGAGCUUUCGGCGCUCACCUGCUCUCCGAGUCUAUUAGGCG
------......((...(((.(((..((((((((((......(((((...-----.)))))........))))))))))..)))..)))...)).(((.....))). ( -32.84)
>consensus
______UGCCGGCCAACACCUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGG_CAAAGCUCGGCAUCAAAGCUCGCGGAGCACACCUGCUCUGCU________CGGCA
........(((((...(((...(((((......)))))..)))..))))).....((((.........))))...(((((......)))))................ (-17.41 = -18.07 +   0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:23 2006