Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,895,839 – 22,895,974 |
Length | 135 |
Max. P | 0.999999 |
Location | 22,895,839 – 22,895,943 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 84.14 |
Mean single sequence MFE | -42.67 |
Consensus MFE | -28.06 |
Energy contribution | -28.50 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526805 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22895839 104 + 27905053 CCCAAACAAUUGCUCAGUGCUUAAGUGCAGCUUUAAGCUAGCUUGCGAGAGUGUGAGCGGGAGCGGGCGCUGUGCGCGAGCGAGACGCCG-CCGGUCAGAGGCGG .........((((((.((((...(((((.(((((......(((..((....))..))).)))))..)))))..))))))))))....(((-((.......))))) ( -43.40) >DroSec_CAF1 12968 101 + 1 GCCACACAAUUGCUCGGUGCUUAAGUGCAGCUUUAAGCUAGCUUGCGAGAGUGCGAGCGAGAGCGGGCGCUGAGCGCUAGCGAGUC---G-CCGGGCGGCGGCGG .((......(((((.((((((((.((((.(((((......(((((((....))))))).)))))..)))))))))))))))))(((---(-((....)))))))) ( -49.20) >DroSim_CAF1 13838 100 + 1 GCCA-ACAAUUGCUCGGUGCUUAAGUGCAGCUUUAAGCUAGCUUGCGAGAGUGCGAGCGAGAGCGGACGCUGAGCGCGAGCGAGUC---G-CCGGGCAGAAGCGG ....-....(((((((((((((.....((((.....(((.(((((((....)))))))...)))....)))).((....))))).)---)-))))))))...... ( -42.30) >DroYak_CAF1 13362 99 + 1 C-CAAACAAUUGCUGCGCGCUUAAGUGCAGCUUUAAGCUAGUUGGCGAGAGUGCGAGCGGGAGAGGGCGCUGUGCGCGAGCGAGAC---GAACUGCCUGGGU--G (-(........(((.(((((((..((.(((((.......)))))))..))))))))))(((..((..((((.(((....))))).)---)..)).)))))..--. ( -35.80) >consensus CCCAAACAAUUGCUCGGUGCUUAAGUGCAGCUUUAAGCUAGCUUGCGAGAGUGCGAGCGAGAGCGGGCGCUGAGCGCGAGCGAGAC___G_CCGGGCAGAGGCGG .........((((((.((((...((((((((.....))).(((((((....)))))))........)))))..))))))))))...................... (-28.06 = -28.50 + 0.44)
Location | 22,895,875 – 22,895,974 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 68.29 |
Mean single sequence MFE | -37.33 |
Consensus MFE | -27.26 |
Energy contribution | -27.60 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.10 |
Mean z-score | -2.80 |
Structure conservation index | 0.73 |
SVM decision value | 6.82 |
SVM RNA-class probability | 0.999999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22895875 99 + 27905053 GCUAGCUUGCGAGAGUGUGAGCGGGAGCGGGCGCUGUGCGCGAGCGAGACGCCGCCGGUCAGAGGCGGUGGAA-GCGGGAUGGGUAGUGAGCGCGAGGGU (((.((((((((.(((((..((....))..))))).).)))))))....(((((((.......)))))))..)-))....((.((.....)).))..... ( -43.10) >DroSec_CAF1 13004 87 + 1 GCUAGCUUGCGAGAGUGCGAGCGAGAGCGGGCGCUGAGCGCUAGCGAGUC---GCCGGGCGGCGGCGGCGAGAAGCGGGAUUGGUAG-AGA--------- (((.(((.(((..(((((..((....))..)))))...))).)))..(((---((((.....)))))))....)))...........-...--------- ( -37.90) >DroSim_CAF1 13873 87 + 1 GCUAGCUUGCGAGAGUGCGAGCGAGAGCGGACGCUGAGCGCGAGCGAGUC---GCCGGGCAGAAGCGGCGGAANNNNNNNNNNNNNN-NNN--------- (((.(((((((..((((...((....))...))))...))))))).)))(---((((........))))).................-...--------- ( -31.00) >consensus GCUAGCUUGCGAGAGUGCGAGCGAGAGCGGGCGCUGAGCGCGAGCGAGUC___GCCGGGCAGAGGCGGCGGAA_GCGGGAU_GGUAG_____________ .((.(((((((..(((((..((....))..)))))...))))))).)).....((((........))))............................... (-27.26 = -27.60 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:22 2006