| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,894,053 – 22,894,147 |
| Length | 94 |
| Max. P | 0.786709 |
| Location | 22,894,053 – 22,894,147 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -15.61 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22894053 94 + 27905053 ---------CGCAACUAAGGCAAACAUUGGAUCGUUUUUCCAUCACAGUUUUAGGUUUUCCGUGAACCUAUUGGAAUUUAGCUAGAACUG-AAAACGAUCUU-UA-------------- ---------.((.......)).......((((((((((.......(((((((((.(.(((((.........)))))...).)))))))))-)))))))))).-..-------------- ( -24.51) >DroSec_CAF1 11257 94 + 1 ---------GUCAACUAAGGCAAACAUUGGAUCGUUUUUCCAUCACAGUUUUAGGUUUUCCGUGAACCCAUUGGAACUUAGUUAGAACUG-AAAGCGAUCUU-UA-------------- ---------(((......))).......((((((((((.......(((((((((.(.(((((((....)).)))))...).)))))))))-)))))))))).-..-------------- ( -23.51) >DroSim_CAF1 11389 94 + 1 ---------GUCAACUAAGGCAAACAUUGGAUCGUUUUUCCACCACAGUUUUAGGUUUUCCGUGAACCCAUUGGAACUUAGCUAGAACUG-AAAGCGAUCUU-UA-------------- ---------(((......))).......((((((((((.......(((((((((.(.(((((((....)).)))))...).)))))))))-)))))))))).-..-------------- ( -25.61) >DroEre_CAF1 40938 102 + 1 AGCAAAUAAGGCAACUAAGGCAAACAUUGGAUCGUUU-UCCCCCACAGUUUUAGGUUUUCCAUGAACCCAUUGGAACUUAGCUAGAACUC-AAAACGAUCUU-UG-------------- .((...(.((....)).).))...((..(((((((((-(.......((((((((.(.(((((((....)).)))))...).)))))))).-)))))))))).-))-------------- ( -24.40) >DroYak_CAF1 11594 109 + 1 ---------GGCAACUAAGGCAAACAUUGGAUAAUUUUUCCCUUACAGUUUUAGGUUUUCCAUGAACCCAUUGGAACUUAGCUAGAACUC-AAAACGAUCUAUUGAACCGGUCCCCUGC ---------((..(((..((....((.(((((..((((........((((((((.(.(((((((....)).)))))...).)))))))).-))))..))))).))..)))))..))... ( -18.40) >DroAna_CAF1 23919 95 + 1 ---------GGCAACUUAUGCAAACAUUAGAGAGUUUUUCCAUCUCAGUUUUAGGUUUUCCAUAAACCAAUUGGAAUUUAGUCAGAACGACUAUGUGCUCUU-UG-------------- ---------.(((.....)))......((((((((..(((((.....((((..((....))..))))....)))))..(((((.....)))))...))))))-))-------------- ( -20.10) >consensus _________GGCAACUAAGGCAAACAUUGGAUCGUUUUUCCAUCACAGUUUUAGGUUUUCCAUGAACCCAUUGGAACUUAGCUAGAACUG_AAAACGAUCUU_UA______________ ............................((((((((((........((((((((.(.(((((.........)))))...).))))))))..)))))))))).................. (-15.61 = -15.70 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:20 2006