| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,892,755 – 22,892,846 |
| Length | 91 |
| Max. P | 0.992385 |
| Location | 22,892,755 – 22,892,846 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 67.34 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -16.87 |
| Energy contribution | -18.32 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.65 |
| SVM decision value | 2.32 |
| SVM RNA-class probability | 0.992385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22892755 91 - 27905053 AAUGUAAGUGUAUACAUAGGCAAAUGCAUGAUUUCUCUGUAAAAUGUGUCUUUGAUGUGAA------------------------ACGCAAUUCAU-AGCUUCAAGGACGAAUUGG .(((((..(((........)))..))))).............(((.(((((((((((((((------------------------......)))))-)...))))))))).))).. ( -18.70) >DroEre_CAF1 39658 114 - 1 AAUGUAAGUGUAUACCUAGGCAAACGCAUGAUUCCUUUUAAGAAUUCGUCUUUGAUGUGAUUCACCGCCUAGUACCUGAGAUCAAUGGCGAUCGAU-UGCUUCAGAGACGAAUUG- .((((...(((........)))...)))).............(((((((((((((.(..(((...((((.................))))...)))-..).))))))))))))).- ( -31.43) >DroYak_CAF1 10341 115 - 1 AAUGUAAGUGUAUACCUAGGACAAUGCAUGCUAUAUUUUAUAAAUUCUUCUCUGAUGUGAGUAACCGCCCUUCACCUUCAAUCAAAGGCGAUCCAUUUGCUUCAGAGACGAAUUG- ((((((.((((((..........))))))..)))))).....(((((.(((((((.(..(((...((((.................))))....)))..).))))))).))))).- ( -27.93) >consensus AAUGUAAGUGUAUACCUAGGCAAAUGCAUGAUUUCUUUUAAAAAUUCGUCUUUGAUGUGAAU_ACCGCC____ACCU___AUCAAAGGCGAUCCAU_UGCUUCAGAGACGAAUUG_ .......((((((..........)))))).............(((((((((((((.((.......((((.................))))........)).))))))))))))).. (-16.87 = -18.32 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:18 2006