Locus 8567

Sequence ID 3R_DroMel_CAF1
Location 22,892,082 – 22,892,178
Length 96
Max. P 0.836834
window13765

overview

Window 5

Location 22,892,082 – 22,892,178
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 77.08
Mean single sequence MFE -34.42
Consensus MFE -25.04
Energy contribution -26.88
Covariance contribution 1.84
Combinations/Pair 1.41
Mean z-score -1.58
Structure conservation index 0.73
SVM decision value 0.74
SVM RNA-class probability 0.836834
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22892082 96 + 27905053
UAAGGUGUUGGCUUUCAUCCUUGGCGCAGGGAUUGUGCUCUUUAGUGUCAUUCCUCAAAGGACGAGCUGGGGAUUGUGGUGGCCGAUACUUGGCUA
..(((((((((((.(((((((..((.(.(((((.(..((....))..).)))))((....)).).))..))))...))).)))))))))))..... ( -34.40)
>DroSec_CAF1 9361 96 + 1
UAAGGUGUUGGCUUUCAUCCUUGGCGCAGGGAUUACGCUCCUUGGUGUCAUUCCUCAGCGAACGCGGUGGGGAUUGUGGUGGCCGAUACUUGGCUA
..(((((((((((.((((...(((((((((((......))))).)))))).((((((.((....)).))))))..)))).)))))))))))..... ( -40.50)
>DroSim_CAF1 9462 96 + 1
GAAGGUGUUGGCUUUCAUCCUUGGCGCAGGGAUUACGCUCCUUGGUGUCAUUCCUCAGCGGACGCGGUGGGGAUUGUGGUGGCCGAUACUUGGCUA
..(((((((((((.((((...(((((((((((......))))).)))))).((((((.((....)).))))))..)))).)))))))))))..... ( -40.60)
>DroEre_CAF1 38983 96 + 1
UGGACACGGGGCUGUCACCCUUGGCGCAGGGAUUAUGUUCCUGGGUGAGAUUCCUCAGUGGACGAGGUGGCGAUUGUGGAGGCCGAUACUUGACUA
.(..(((((((.(.((((((..((.(((.......))).)).)))))).)..)))).)))..)(((.((((..........))))...)))..... ( -31.50)
>DroYak_CAF1 9646 93 + 1
UGUGCUUGUGCAUGUUACCCUUGGAGCAGGGAUUUUGAUCCUUGGUGUCAUUC---UGGGCAUGUGGUGGGGCUUGCGAAGUGUGUUGGUUGACUA
.(..(((.((((.((..(((......(((((((....)))))))(((((....---..)))))..)).)..)).)))))))..)............ ( -25.10)
>consensus
UAAGGUGUUGGCUUUCAUCCUUGGCGCAGGGAUUAUGCUCCUUGGUGUCAUUCCUCAGCGGACGAGGUGGGGAUUGUGGUGGCCGAUACUUGGCUA
..(((((((((((.((((...(((((((((((......))))).)))))).((((((.((....)).))))))..)))).)))))))))))..... (-25.04 = -26.88 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:17 2006