Locus 8566

Sequence ID 3R_DroMel_CAF1
Location 22,882,768 – 22,882,877
Length 109
Max. P 0.981769
window13764

overview

Window 4

Location 22,882,768 – 22,882,877
Length 109
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 75.00
Mean single sequence MFE -29.08
Consensus MFE -20.79
Energy contribution -21.52
Covariance contribution 0.72
Combinations/Pair 1.10
Mean z-score -1.99
Structure conservation index 0.71
SVM decision value 1.90
SVM RNA-class probability 0.981769
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22882768 109 + 27905053
UUCCGGUGAGAUGACUACGAAGUACCAUCGCCAUGUCGGCGAUGCCCUAUUCCGGAAACCCAAAAUAUGCAUUAGGUGCAAGAC-CCUUCACU-------UAGUAUC-CGUUUCCG-UU
((((((..((...(((....)))..(((((((.....)))))))..))...)))))).............((((((((.(((..-.)))))))-------))))...-........-.. ( -28.10)
>DroVir_CAF1 231 113 + 1
AACCGGUGAGAUGACCUCCAAAUACAAUCGCCGAAAUGGUGAUGGUCUAGUCAGGAAACCUAAAAUACGCAUUAGGUGCCUCCUCCCUUAUCU----CUUUAGUACA-UUAUUAU-GUA
.((..(.(((((((((..........((((((.....)))))))))).((..((((.((((((........))))))...))))..)).))))----).)..))(((-(....))-)). ( -27.50)
>DroPse_CAF1 9255 116 + 1
AACCGGUGAGAUGACCUUCAAGUACCAUCGCCGAAACGGUGAUGGUCUAGUCAGGAAACCUAAAAUACGAAUUAGGUGCCACCC-CUCUCUCUCUCUUUCUAGUAUC-UACUUAUU-UU
.((..(.((((((((.....((.((((((((((...)))))))))))).))))((..((((((........)))))).))....-.......))))...)..))...-........-.. ( -30.90)
>DroGri_CAF1 231 109 + 1
AACCGGUGAGAUGACCUUCAAAUACCAUCGCCGAAAUGGUGAUGGUCUAGUCAGGAAACCUAAAAUACGCAUUAGGUGCC---UCCCUUCU------CUCUAGUACA-UACUUACUAAA
....(((((((((..........(((((((((.....)))))))))((((...(((.((((((........))))))...---))).....------..))))..))-).))))))... ( -31.20)
>DroWil_CAF1 228 109 + 1
AACUGGUGAGAUGACCUUCAAAUACCAUCGCCGAAAUGGUGAUGGUCUAGUCAGGAAACCUAAAAUACGGAUUAGGUGCCACCC-UCUUUCUU-------U--UAACCCAUUUUCUCAA
......(((((((((........(((((((((.....)))))))))...))))((..((((((........)))))).))....-........-------.--..........))))). ( -27.70)
>DroAna_CAF1 12028 111 + 1
AACUGGUGAGAUGCCCUUCAAGUACCAUCGCCGACUCGGUGAUGGUCUAGUCAGGAAACCUAAAAUACGCAUUAGGUGCCACCCUUCUUCACU-------CAAUAACCCGUUUUCG-AA
....((((......(((.(.((.((((((((((...)))))))))))).)..)))..((((((........))))))..))))..........-------................-.. ( -29.10)
>consensus
AACCGGUGAGAUGACCUUCAAAUACCAUCGCCGAAACGGUGAUGGUCUAGUCAGGAAACCUAAAAUACGCAUUAGGUGCCACCC_CCUUCUCU_______UAGUAAC_CAUUUACU_AA
....(((.......(((......(((((((((.....)))))))))......)))..((((((........)))))))))....................................... (-20.79 = -21.52 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:16 2006