Locus 8564

Sequence ID 3R_DroMel_CAF1
Location 22,881,255 – 22,881,373
Length 118
Max. P 0.833271
window13760

overview

Window 0

Location 22,881,255 – 22,881,373
Length 118
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 95.62
Mean single sequence MFE -31.78
Consensus MFE -27.27
Energy contribution -27.90
Covariance contribution 0.63
Combinations/Pair 1.03
Mean z-score -2.15
Structure conservation index 0.86
SVM decision value 0.72
SVM RNA-class probability 0.833271
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22881255 118 + 27905053
CCAAUAAAACGACUUGGCGGGUUCAUAAAAUGCAACUACCAGCUGGCCCAGCGGAAAACUGCCUCCAAAUGCACCCAUCUGACAUCAGAAAAUUGUCGGAGACCGAGAUUCGCAUCCC
.........(((((((((((((.(((...............((((...))))(((........)))..))).)))).(((((((.........)))))))).)))))..)))...... ( -30.50)
>DroSec_CAF1 26264 118 + 1
CCAAUAAAACGACUUGGCGGGUUCAUAAAAUGCAACUACCAGCUGGCCCAGCGGAAAACUGCCGCCAAAUGCACCCAUCUGACAUCAGAAAAUUGUCGGAGACCGAGAUUCACAUCCA
............((((((((((.(((.....((........))((((...((((....)))).)))).))).)))).(((((((.........)))))))).)))))........... ( -32.70)
>DroSim_CAF1 27398 118 + 1
CCAAUAAAACGACUUGGCGGGUUCAUAAAAUGCAACUACCAGCUGGCCCAGCGGAAAACUGCCGCCAAAUGCACCCAUCUGACAUCAGAAAAUUGUCGGAGACCGAGAUUCACAUCCA
............((((((((((.(((.....((........))((((...((((....)))).)))).))).)))).(((((((.........)))))))).)))))........... ( -32.70)
>DroYak_CAF1 30898 118 + 1
CCAAUAAAACGACUUGGCGGGUUCAUAAAAUGCAACUGCCAGCUUGUCCAGCGGAAAACUGCCGCCAGAUGCACCCAUCUGACAUCAGAAAAAUGUCGUACACCGAGAUUCGCAUCCA
........((((.(((((((...(((...)))...))))))).))))...((((.......))))..(((((.....((((....))))..(((.(((.....))).))).))))).. ( -31.20)
>consensus
CCAAUAAAACGACUUGGCGGGUUCAUAAAAUGCAACUACCAGCUGGCCCAGCGGAAAACUGCCGCCAAAUGCACCCAUCUGACAUCAGAAAAUUGUCGGAGACCGAGAUUCACAUCCA
............(((((.((((.(((.....((........))((((...((((....)))).)))).))).)))).(((((((.........)))))))..)))))........... (-27.27 = -27.90 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:12 2006