Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,879,207 – 22,879,310 |
Length | 103 |
Max. P | 0.500000 |
Location | 22,879,207 – 22,879,310 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 78.16 |
Mean single sequence MFE | -21.61 |
Consensus MFE | -15.18 |
Energy contribution | -15.93 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.18 |
Mean z-score | -1.48 |
Structure conservation index | 0.70 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22879207 103 + 27905053 -------------UGUGCAGCUUUAAAAUUAGCAGCUCUUCAACUUUUGAGUUGGUUCACUAAAGUUAUUAUAAGUAAUAAGCACCCACAAGCCUUUGAUAGCUUUGCUGAAAUAA -------------.(.((.(((........))).)).).((((((....))))))((((.(((((((((((.(((......((........)))))))))))))))).)))).... ( -20.40) >DroSec_CAF1 24601 114 + 1 AGGAAAAUGUAAAAGCGCAGCUUUAACAUAAGUAGCUUCUAAACUUAUGAGUUGCUCCACUAAAGUUAUUAUAAAUAAUAAGCAUCCACAACU--CUGAUAGCUGUGCUAAAAUAA .............((((((((((((..((((((.........))))))((((((..........(((((.....))))).........)))))--)))).)))))))))....... ( -22.91) >DroSim_CAF1 25324 116 + 1 AGGAAACUGUAAAAGCGCAGCUUUAACAUAAGUAGCUUCUUAACUUUUGAGUUGCUCCACUAAAGUUAUUAUAAAUAAUAAGCAUCCACAACCCUUUGAUAGCUUUGCUGAAAUAA ((....)).....((((((((((.....((((......))))......)))))))......((((((((((.........................)))))))))))))....... ( -21.01) >DroYak_CAF1 28706 109 + 1 AGGAAACCGUAAAAACGCAGCUUUAACAUUAGCAGCUCUUAAACUUUUGAGUUGGAUCACUAAAGAUAUUAUAAAUAAUGAUCAUC-------CUUUGAUAGCUGUGCUGAAAUGU .(....)........(((((((....(((((.((((((..........)))))).(((......)))........)))))((((..-------...)))))))))))......... ( -22.10) >consensus AGGAAACUGUAAAAGCGCAGCUUUAACAUAAGCAGCUCCUAAACUUUUGAGUUGCUCCACUAAAGUUAUUAUAAAUAAUAAGCAUCCACAACCCUUUGAUAGCUGUGCUGAAAUAA .............(((((((((((((....((((((((..........))))))))........(((((((....))))).))............)))).)))))))))....... (-15.18 = -15.93 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:11 2006