| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,878,061 – 22,878,175 |
| Length | 114 |
| Max. P | 0.571365 |
| Location | 22,878,061 – 22,878,175 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.49 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -16.55 |
| Energy contribution | -16.33 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.571365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22878061 114 + 27905053 UCGUAAAAAAAGGAAACGUGUUGCCCGGCGGGCAAAGUGGCCAAAACAGGGCAAACUGUGUAACAGAACGACCAUAAACAGGGCUUUGAAAGUGGGCAAUUGGCCGGAAAAAAC------ ..((((.....(....)...))))(((((.((.....((.(((...((((((...((((..................)))).))))))....))).)).)).))))).......------ ( -30.67) >DroSim_CAF1 24047 93 + 1 UCAUAAA---------------------CUGGCAAACUGGCCAAAACAGGACAAGCUGUAGAACAGAACGACCAUAAACAGGGCUUUGCAAGUGGGCAAUUGGCCGGAAAAAAC------ .......---------------------........((((((((....((.....(((.....))).....))............((((......)))))))))))).......------ ( -21.10) >DroYak_CAF1 27410 119 + 1 UCGUAAA-AAAGGAAACGUGUUGCCCGGCUGGCCAAAUGGCCAAAACAGGACAAACUGUGGAACAGAAGGACCGUAAACAGGACUUUGCAUGUGGGAAAUUGGCCGGAAAAAACUGCUAU ..((((.-...(....)...))))((((((((((....))))...((((......))))...(((.((((.((.......)).))))...)))........))))))............. ( -31.40) >consensus UCGUAAA_AAAGGAAACGUGUUGCCCGGCUGGCAAAAUGGCCAAAACAGGACAAACUGUGGAACAGAACGACCAUAAACAGGGCUUUGCAAGUGGGCAAUUGGCCGGAAAAAAC______ .....................................(((((((.((((......))))............((((...(((....)))...))))....))))))).............. (-16.55 = -16.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:10 2006