| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,877,082 – 22,877,172 |
| Length | 90 |
| Max. P | 0.698748 |
| Location | 22,877,082 – 22,877,172 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 67.29 |
| Mean single sequence MFE | -24.44 |
| Consensus MFE | -7.68 |
| Energy contribution | -8.48 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22877082 90 + 27905053 ---------------UUCCAGGAAAGAGGCAGGAAGAUCGUUCGCCUGAAGUUUGUU--AAUGACAAACUGUUGCUCCGGGU----UUUC-CCUCUCAU-UACCAACUGCUUU------ ---------------.....((((.((((..((((((((....((....((((((((--...))))))))...))....)))----))))-).)))).)-).)).........------ ( -22.30) >DroSec_CAF1 22829 91 + 1 ---------------UUUCAGGAAAAGGGCAGGAAGAUCGUUCGCCUGAAGUUUGUU--CAUGACAAACUUUUGCUUCGGUU----UUUCCCCUCUCAU-UACCAACUGCUUU------ ---------------.....((.((((((..(((((((((...((..((((((((((--...)))))))))).))..)))))----))))))))....)-).)).........------ ( -24.60) >DroSim_CAF1 23075 91 + 1 ---------------UUUCAGGAAAAGGGCAGGAAGAUCGUUCGCCUGAAGUUUGUU--CAUGACAAACUGUUGCUCCGGUU----UUUCCCCUCUCAU-UACCAACUGCUUU------ ---------------.....((.((((((..(((((((((...((....((((((((--...))))))))...))..)))))----))))))))....)-).)).........------ ( -21.50) >DroWil_CAF1 30077 117 + 1 AAAUAAGCAAAUAAACCUCAGAAAUAGGCUGGCAACAUCGCUCACCAGCAAUAUGUUGCACCGGCAAUAUGUUGCACCAGCAACAUUGUG-UAUG-GAUCAACAAAUUGCUUUUGACCA .................((((((...((..(((......)))..)).(((((.(((((..((((((..(((((((....)))))))..))-).))-)..))))).)))))))))))... ( -32.20) >DroYak_CAF1 26402 87 + 1 ---------------UUUCAGGGAAGAGGCAGCAAGAUCGUUUGCCUCAAGU----U--AAUGACAAACUGUUGCUCUGUUU----UCUUCCCCCUCAU-UACCAACUGCUUU------ ---------------.....((((((((((((...(((.(((((..(((...----.--..)))))))).)))...))).))----)))))))......-.............------ ( -21.60) >consensus _______________UUUCAGGAAAAGGGCAGGAAGAUCGUUCGCCUGAAGUUUGUU__AAUGACAAACUGUUGCUCCGGUU____UUUCCCCUCUCAU_UACCAACUGCUUU______ .........................(((((((...((....))((....((((((((.....))))))))...))...............................)))))))...... ( -7.68 = -8.48 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:09 2006