Locus 8557

Sequence ID 3R_DroMel_CAF1
Location 22,858,379 – 22,858,476
Length 97
Max. P 0.997301
window13750

overview

Window 0

Location 22,858,379 – 22,858,476
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 86.33
Mean single sequence MFE -35.54
Consensus MFE -26.06
Energy contribution -29.58
Covariance contribution 3.52
Combinations/Pair 1.06
Mean z-score -4.12
Structure conservation index 0.73
SVM decision value 2.83
SVM RNA-class probability 0.997301
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22858379 97 - 27905053
GUUUUUAUUUUCAUCUUUUGGCAUGGGCUCUUUUUGUUUGCCAGCUGAAGGAGUCCCUGUCGGAUGACUGUCUGAUCUAUCUGGGACUGGGCAGUCA
................(((((((.((((((((((.((......)).)))))))))).)))))))(((((((((..(((.....)))..))))))))) ( -37.10)
>DroSec_CAF1 4609 95 - 1
GUUUUUAUUUUCAUCUUUUGGCAUGGGCUCUUUCUGUUGGCCAGCUGAAGGAGUCCCUGUCGGAUGACUGUCUGAUCU--CUGGGAUUGGGCAGUCA
................(((((((.((((((((((.(((....))).)))))))))).)))))))((((((((..(((.--....)))..)))))))) ( -42.50)
>DroSim_CAF1 4619 95 - 1
GUUUUUAUUUUCAUCUUUUGGCAUGGGCUCUUUCUGUUUGCCAGCUGAAGGAGUCCCUGUCGGAUGACUGUCUGAUCU--CUGGAACUGGGCAGUCA
................(((((((.((((((((((.((......)).)))))))))).)))))))((((((((((.((.--...)).).))))))))) ( -35.50)
>DroEre_CAF1 4636 75 - 1
GUUUUUGUUUCCAUCUUUU--------------------GGCAGAUGAAGGAGUCCCUGUCGGGUGACUGUCUGAUCU--CUGGGAUUGGGCAGUCA
.((((..((((((.....)--------------------)).)))..))))...(((....)))((((((((..(((.--....)))..)))))))) ( -27.30)
>DroYak_CAF1 4540 95 - 1
GUUUUUAUUUUCAUCUUUUGGCAUGGGCUCUCUCUGUUUGGCAGAUGAAGGAGUCCCUGUCGGAUGACUGUCUGAUCU--CUGGGACUGGGCAGUCA
................(((((((.(((((((.((((.....))))....))))))).)))))))(((((((((..((.--....))..))))))))) ( -35.30)
>consensus
GUUUUUAUUUUCAUCUUUUGGCAUGGGCUCUUUCUGUUUGCCAGCUGAAGGAGUCCCUGUCGGAUGACUGUCUGAUCU__CUGGGACUGGGCAGUCA
................(((((((.((((((((((.((......)).)))))))))).)))))))(((((((((..(((.....)))..))))))))) (-26.06 = -29.58 +   3.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:02 2006