| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,855,541 – 22,855,658 |
| Length | 117 |
| Max. P | 0.619258 |
| Location | 22,855,541 – 22,855,658 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.74 |
| Mean single sequence MFE | -39.27 |
| Consensus MFE | -28.27 |
| Energy contribution | -27.67 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.619258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22855541 117 - 27905053 UGUUUGCUGUUUGAAAUGGU--CGGUACUUACUUCUCGCAUUUCGUGUGCCACGGCGACAUUGGGAUGUCGAGUCCAGAGACGAUGGGUAUGGGAAGUGCGGUGGCAAGUGCAAUAAAC .....(((((.....)))))--..((((((.((.(.((((((((.((((((....((((((....)))))).(((....)))....)))))).))))))))).)).))))))....... ( -37.50) >DroPse_CAF1 1978 112 - 1 -------UGCUUCGAGUGGCAGCGGUACUUACUUCUCGCAUUUCUCGUGCCACGCCGAUGUGGGCAUGACGAGGCGGGAGACGACAGGUAUGGGAAACGCGGUGGCAAGUGCAAUAAAC -------((((......))))...((((((.((.(.(((.(((((((((((.((((..(((.......))).))))(....)....))))))))))).)))).)).))))))....... ( -41.50) >DroSec_CAF1 1766 110 - 1 -------UGUUUCAAAUGGU--CGGUACUUACUUCUCGCAUUUCUCGUGCCAUGGCGUCAUGGGGAUGUCGAGUCCAGAGACGAUGGGUAUGGGAAGUGCGGUGGCAAGUGCAAUAAAC -------.............--..((((((.((.(.(((((((((((((((....((((....((((.....))))...))))...)))))))))))))))).)).))))))....... ( -43.40) >DroSim_CAF1 1826 110 - 1 -------UGUUUCAAAUGGU--CGGGACUUACUUCUCGCAUUUCUCGUGCCACGGCGUCAUGGGGAUGUCGAGUCCAGAGACGAUGGGUAUGGGAAGUGCGGUGGCAAGUGCAAUAAAC -------.............--..(.((((.((.(.(((((((((((((((.(((((((.....))))))).(((....)))....)))))))))))))))).)).)))).)....... ( -41.70) >DroWil_CAF1 1679 117 - 1 UGUUUAUUGUUUCACAUCUU--UUGUACUUACUUUUCGCAUUUCUCAUGCCACGGGGAUGAGGGUAAAUCGAGGCCAGAGACCACGGGAAUGGGAAACGCUGUGGCAAGUGCAAUAAAC .(((((((((...(((....--.)))....((((.(((((((((((((.((.((((..(...(((........)))..)..)).)))).))))))))...))))).))))))))))))) ( -32.50) >DroPer_CAF1 1968 112 - 1 -------UGUUUCGAGUGGCAGCGGUACUUACUUCUCGCAUUUCUCGUGCCACGCCGAUGUGGGCAUGACGAGGCGGGAGACGACAGGUAUGGGAAACGCGGUGGCAAGUGCAAUAAAC -------((((......))))...((((((.((.(.(((.(((((((((((.((((..(((.......))).))))(....)....))))))))))).)))).)).))))))....... ( -39.00) >consensus _______UGUUUCAAAUGGU__CGGUACUUACUUCUCGCAUUUCUCGUGCCACGGCGACAUGGGGAUGUCGAGGCCAGAGACGACGGGUAUGGGAAACGCGGUGGCAAGUGCAAUAAAC ........................((((((.((..((((.(((((((((((....((.(...(((........)))...).))...))))))))))).)))).)).))))))....... (-28.27 = -27.67 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:59 2006