| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,848,125 – 22,848,244 |
| Length | 119 |
| Max. P | 0.626293 |
| Location | 22,848,125 – 22,848,244 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.88 |
| Mean single sequence MFE | -42.72 |
| Consensus MFE | -26.83 |
| Energy contribution | -27.03 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22848125 119 + 27905053 AGAGUGCCACCAUUGGUCUGGAUG-GACUCCACAUACCAGGCAUCGUCGGAAUUCAGACGCUUGUUGGGCUUGUUGUAGCUGAAGAGGGGCAGGGCGGGGUCCAGACCAAUGAUGGUGUG ...(..(((.(((((((((....(-((((((.....((..((..((((........))))(((.((.((((......)))).)).))).))..)).)))))))))))))))).)))..). ( -48.70) >DroVir_CAF1 42568 119 + 1 AGCUUGCCGCCGUUGGUCUGAAUG-GACUCCACAUAAUAGGCGUCAUCGGAGGACAGGCGCUUGUUGGGCUUAUUAUAACUAAACAAAGGCAAGGCAGGAUCUAGACCAAUAAUGGUGUG ..((((((((((((..(((((...-(((.((........)).))).))))).))).)))((((.((((...........))))....))))..))))))...((.((((....)))).)) ( -35.70) >DroPse_CAF1 9693 119 + 1 AGAGUACCACCGUUGGUCUGGAUG-GACUCCACAUAGUGGGCAUCAUCGCUAGAGAGACGCUUGUUGGGCUUGUUGUAGUUGAAGAGGGGAAGUGCGGGGUCCAGACCGAUGAUGGUGUG ....(((((.(((((((((((((.-..((((((.((((((......))))))......(.(((.((.((((......)))).)).))).)..))).)))))))))))))))).))))).. ( -46.60) >DroGri_CAF1 34150 119 + 1 AGCUUGCCGCCGUUGGUCUGAAUG-GAUUCGACAUAGAAAGCAUCGCCGGAGCACAAACGCUUGGUGGGCUUGUCAUAGCUGAACAGAGGCAGAGCAGGAUCCAAGCCAAUAAUGGUGUG .....((((..(((((.((...((-(((((((((.....(((.((((((.(((......))))))))))))))))...(((.......)))......))))))))))))))..))))... ( -38.30) >DroMoj_CAF1 52553 119 + 1 AGCGUGCCACCGCUGGUGUGAAUG-GACUCUACGUAGUAGGCAUCUUUGGAGGAGAGACGCUCUUCGGACUUGUCGUAGCUGAACAGGGGUAGAGCGGUGUCCAGACCGAUGAUGGUGUG ..((..(((.((.((((.((.((.-(.((((((.((((.((((...((.((((((.....)))))).))..))))...)))).......))))))).))...)).)))).)).)))..)) ( -37.40) >DroPer_CAF1 11574 120 + 1 AGGUUGCCGCCGUUGGUCUGGAUGGGACUCCACAUACCAGGCGUCGGUGGAGCUGAGACGCUUGUUGGGCGAGUAGUAGCUGAAGAGGGGAAGUGCGGGGUCCAGGCCGAUGAUGGCGUA .....((((.(((((((((.....(((((((.(((.((...(.(((((...((((...((((.....))))..)))).))))).)..))...))).)))))))))))))))).))))... ( -49.60) >consensus AGCGUGCCACCGUUGGUCUGAAUG_GACUCCACAUAGUAGGCAUCGUCGGAGGACAGACGCUUGUUGGGCUUGUUGUAGCUGAACAGGGGCAGAGCGGGGUCCAGACCAAUGAUGGUGUG .....((((.((((((((((.....((((((.((...(((((.((...........)).))))).))((((......))))...............)))))))))))))))).))))... (-26.83 = -27.03 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:57 2006