| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,823,793 – 22,823,911 |
| Length | 118 |
| Max. P | 0.986070 |
| Location | 22,823,793 – 22,823,911 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.22 |
| Mean single sequence MFE | -24.12 |
| Consensus MFE | -14.23 |
| Energy contribution | -13.57 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.59 |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.986070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22823793 118 + 27905053 UAUUUACCGA-UUCGCUUAUAUUUAGCAUUUGUUUUAGCUGUUGUCGUUCGGUUAACGCAAUAUGCCAUGGUUUUUACUGUUUGUUUGCCGCCAUGUUGCGAUUCUGGUUUAUUAAUUC .....(((((-.((((.........((((((((.(((((((........))))))).)))).))))((((((....((.....)).....))))))..)))).)).))).......... ( -30.10) >DroEre_CAF1 3153 105 + 1 UAUUUACCAACCCAGCUUUUAUUUUGCAUUUAUG--------------UCGGUAAGCGCAAUAUGUCAUUGUUUUAACUGCUUGUUUGCCGGCAUGUUGCGAUUCUGGCUUAUUAAUUC .............((((......(((((..((((--------------((((((((((((..................)))..))))))))))))).)))))....))))......... ( -26.97) >DroYak_CAF1 3152 96 + 1 UAUUUACCGACUCCGCUUUUAUUUUGCAUUUA-----------------------ACGCAAUAUGGCAUUGUUUUUACUGUUUGCUUGCCGGCAUGUUGUGAUUCUGGUUUAUUAUUUC .....((((.....((.........)).....-----------------------.((((((((((((..((...........)).))))...))))))))....)))).......... ( -15.30) >consensus UAUUUACCGACUCCGCUUUUAUUUUGCAUUUAU_______________UCGGU_AACGCAAUAUGCCAUUGUUUUUACUGUUUGUUUGCCGGCAUGUUGCGAUUCUGGUUUAUUAAUUC ......(((.....((.........)).............................(((((((((.(...((....)).((......)).).)))))))))....)))........... (-14.23 = -13.57 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:56 2006