Locus 855

Sequence ID 3R_DroMel_CAF1
Location 2,896,504 – 2,896,595
Length 91
Max. P 0.500000
window1364

overview

Window 4

Location 2,896,504 – 2,896,595
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 78.81
Mean single sequence MFE -17.99
Consensus MFE -11.88
Energy contribution -11.60
Covariance contribution -0.27
Combinations/Pair 1.25
Mean z-score -1.17
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2896504 91 - 27905053
GGUAAUUAAGACCAUGAUGGCCAAUCUUUUGCAAGAAUAA--UAUACUUACUGCUUUGGAAAAAUGGGUAUAAAUACAUCAUUUUCUAGGGCU
(((.((((......)))).)))..((((....))))....--..........(((((((((((.((((((....))).)))))))))))))). ( -18.00)
>DroPse_CAF1 3003 89 - 1
-AAAGUUAACACAGU---UCCCAAAUGUGUGGGCUAAUCCUGUUCACUUACUGCUUGGGAAAUAUGGGUAUAAACACAUCAUUUUCCAAUGCC
-.((((.((((..((---(((((......))))..)))..)))).))))...((((((((((((((.((....)).))).))))))))).)). ( -21.70)
>DroSec_CAF1 3242 88 - 1
AGAGAUUAAGACCGU---GGCCAAUCUUUUGCAAGAAUAA--UAUACUUACUGCUUUGGAAAAAUGGGUAUAAAUACAUCGUUUUCUAGGGCC
(((((((..(.(...---.)).)))))))...........--..........(((((((((((....(((....)))....))))))))))). ( -14.80)
>DroSim_CAF1 4286 88 - 1
AGAGAUUAAGACCGU---GGUCAAUCUUUUGCAAGAAUAA--UAUACUUACUGCUUUGGAAAAAUGGGUAUAAAUACAUCGUUUUCUAGGGCC
(((((((..(((...---.))))))))))...........--..........(((((((((((....(((....)))....))))))))))). ( -19.60)
>DroEre_CAF1 3284 88 - 1
GAAAAUUUAAACAGU---GGUCAAUAUUUUGAAUGAAUAA--UACACUUACUGCUUUGGAAAAAUGGGUAUAAAGACAUCGUUUUCUAGGGCU
............(((---(.....(((((.....))))).--..))))....(((((((((((....((......))....))))))))))). ( -15.80)
>DroYak_CAF1 3826 87 - 1
GAAAAUGAAAACAGU---GAUCUAUAUUUUAAAAGAGUAA--C-UGCUUACUGCUUUGGAAAAAUGGGUAUAAAGACAUCGUUUUCUAGAGCC
((((((((.......---.((((((.((((.(((((((((--.-...))))).)))).)))).)))))).........))))))))....... ( -18.03)
>consensus
GAAAAUUAAGACAGU___GGCCAAUCUUUUGCAAGAAUAA__UAUACUUACUGCUUUGGAAAAAUGGGUAUAAAUACAUCGUUUUCUAGGGCC
....................................................((((((((((.((((((......)).)))))))))))))). (-11.88 = -11.60 +  -0.27) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:54 2006