Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,896,504 – 2,896,595 |
Length | 91 |
Max. P | 0.500000 |
Location | 2,896,504 – 2,896,595 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 78.81 |
Mean single sequence MFE | -17.99 |
Consensus MFE | -11.88 |
Energy contribution | -11.60 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.25 |
Mean z-score | -1.17 |
Structure conservation index | 0.66 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2896504 91 - 27905053 GGUAAUUAAGACCAUGAUGGCCAAUCUUUUGCAAGAAUAA--UAUACUUACUGCUUUGGAAAAAUGGGUAUAAAUACAUCAUUUUCUAGGGCU (((.((((......)))).)))..((((....))))....--..........(((((((((((.((((((....))).)))))))))))))). ( -18.00) >DroPse_CAF1 3003 89 - 1 -AAAGUUAACACAGU---UCCCAAAUGUGUGGGCUAAUCCUGUUCACUUACUGCUUGGGAAAUAUGGGUAUAAACACAUCAUUUUCCAAUGCC -.((((.((((..((---(((((......))))..)))..)))).))))...((((((((((((((.((....)).))).))))))))).)). ( -21.70) >DroSec_CAF1 3242 88 - 1 AGAGAUUAAGACCGU---GGCCAAUCUUUUGCAAGAAUAA--UAUACUUACUGCUUUGGAAAAAUGGGUAUAAAUACAUCGUUUUCUAGGGCC (((((((..(.(...---.)).)))))))...........--..........(((((((((((....(((....)))....))))))))))). ( -14.80) >DroSim_CAF1 4286 88 - 1 AGAGAUUAAGACCGU---GGUCAAUCUUUUGCAAGAAUAA--UAUACUUACUGCUUUGGAAAAAUGGGUAUAAAUACAUCGUUUUCUAGGGCC (((((((..(((...---.))))))))))...........--..........(((((((((((....(((....)))....))))))))))). ( -19.60) >DroEre_CAF1 3284 88 - 1 GAAAAUUUAAACAGU---GGUCAAUAUUUUGAAUGAAUAA--UACACUUACUGCUUUGGAAAAAUGGGUAUAAAGACAUCGUUUUCUAGGGCU ............(((---(.....(((((.....))))).--..))))....(((((((((((....((......))....))))))))))). ( -15.80) >DroYak_CAF1 3826 87 - 1 GAAAAUGAAAACAGU---GAUCUAUAUUUUAAAAGAGUAA--C-UGCUUACUGCUUUGGAAAAAUGGGUAUAAAGACAUCGUUUUCUAGAGCC ((((((((.......---.((((((.((((.(((((((((--.-...))))).)))).)))).)))))).........))))))))....... ( -18.03) >consensus GAAAAUUAAGACAGU___GGCCAAUCUUUUGCAAGAAUAA__UAUACUUACUGCUUUGGAAAAAUGGGUAUAAAUACAUCGUUUUCUAGGGCC ....................................................((((((((((.((((((......)).)))))))))))))). (-11.88 = -11.60 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:54 2006