| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,819,051 – 22,819,168 |
| Length | 117 |
| Max. P | 0.983126 |
| Location | 22,819,051 – 22,819,168 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 96.07 |
| Mean single sequence MFE | -39.38 |
| Consensus MFE | -35.02 |
| Energy contribution | -35.66 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.983126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22819051 117 - 27905053 GUAAUUGCAGCCGACGCAUCUCGACGCAGCGAGGUGGAGAAAUGUCGAGUGGCUGUGCGGACACAUGUAGCUUAUGGCUAUAACUACAUCGACAUGGCUAUAAGGCGGCACAAGAAG .....(((.(((....(((((((......))))))).((..(((((((((((.((((....))))((((((.....)))))).)))).)))))))..))....))).)))....... ( -42.20) >DroSec_CAF1 27938 117 - 1 GUAAUUGCAGCCGACGCAUCUCGACGCAGCGAGGUGGAGAAAUGUCGAGUGCCUGUGCGGACACAUGUAGCUUAUGGCCAUAACUACAUCGACAUGGCUAAAAGGCGGCACAAGAAG .....(((.(((....(((((((......))))))).((..((((((((((((.....)).))).(((((.((((....))))))))))))))))..))....))).)))....... ( -40.50) >DroSim_CAF1 28307 117 - 1 GUAAUUGCAGCCGACGCAUCUCGACGCAGCGAGGUGGAGAAAUGUCGAGUGCCUGUGCAGACACAUGUAGCUUAUGGCCAUAACUACAUCGACAUGGCUAAAAGGCGGCACAAGAAG .....(((.(((....(((((((......))))))).((..((((((((((.((....)).))).(((((.((((....))))))))))))))))..))....))).)))....... ( -39.10) >DroEre_CAF1 28046 117 - 1 GUAAUUGCAGCCGACGCAUCUCGACGCAGCGAGGUGGAGAAAUGUCGAGUGCCUGUAUGGACACAUGUAGCUUAUGGCCAUAACCACAUCCACAUGGCUAAAAGGCGGCACAAGAAG .....(((.(((....(((((((......))))))).((..((((.(((((....(((((...((((.....)))).)))))..))).)).))))..))....))).)))....... ( -35.30) >DroYak_CAF1 28262 116 - 1 GUAAUUGCAGCCGACGCAUCUCGGCGCAGCGAGGUGGAGAAAUGUCGAGUGC-UGUACGGACACAUGUAGCUUAUGGCCAUAACUACAUCCACAUGGCUAUAAGGCGGCACAAGAAG ....((((.(((((......)))))))))(((.((......)).))).((((-((((((......)))..(((((((((((............))))))))))))))))))...... ( -39.80) >consensus GUAAUUGCAGCCGACGCAUCUCGACGCAGCGAGGUGGAGAAAUGUCGAGUGCCUGUGCGGACACAUGUAGCUUAUGGCCAUAACUACAUCGACAUGGCUAAAAGGCGGCACAAGAAG .....(((.(((....(((((((......))))))).((..((((((((((.((....)).))).(((((.((((....))))))))))))))))..))....))).)))....... (-35.02 = -35.66 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:50 2006