Locus 8547

Sequence ID 3R_DroMel_CAF1
Location 22,818,278 – 22,818,377
Length 99
Max. P 0.870103
window13736

overview

Window 6

Location 22,818,278 – 22,818,377
Length 99
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 95.20
Mean single sequence MFE -27.32
Consensus MFE -25.92
Energy contribution -26.04
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.27
Structure conservation index 0.95
SVM decision value 0.87
SVM RNA-class probability 0.870103
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22818278 99 - 27905053
---AAGACCAAAGGAGCUGCCGCAGAUUGUGUCAUCAAGGGUUCGAAAUUUGGUGAAAAUCAGGUCAACAGUGCAGUAGCACGUCCAUCGAUGAGUUAUUGA
---..((((......((....)).((((...((((((((.........)))))))).)))).)))).......(((((((.((((....)))).))))))). ( -28.00)
>DroSec_CAF1 27204 102 - 1
AGAAAGACCAAAGGAGCUGCCGCAGAUUGUGUCAUCGAGGGUUCGAAAUUUGGUGAAAAUCAGGUCAACAGUGUAGUAGCACGUCCAUCGAUGAGUUAUUGA
.....((((......((....)).((((...((((((((.........)))))))).)))).)))).......(((((((.((((....)))).))))))). ( -25.80)
>DroSim_CAF1 27577 102 - 1
AGAAAGACCAAAGGAGCUGCCGCAGAUUGUGUCAUCGAGGGUUCGAAAUUUGGUGAAAAUCAGGUCAACAGUGCAGUAGCACGUCCAUCGAUGAGUUAUUGA
.....((((......((....)).((((...((((((((.........)))))))).)))).)))).......(((((((.((((....)))).))))))). ( -27.70)
>DroEre_CAF1 27236 102 - 1
AGGAAGACCAAAAGAGCUGCCGCAGAUUGUGUCAUCGACGGUUCGAAAUUUGGUGAAAAUCAGGUCAACAGUGCAGUAGCACGUCCAUCGAUGAGUUAUUGA
.....((((....((((((.((..(((...)))..)).))))))......((((....)))))))).......(((((((.((((....)))).))))))). ( -28.50)
>DroYak_CAF1 27450 102 - 1
AGAAAGACCAAAGGAGCUGGCGAAGAUUGUGUCAUCGACGGAUCGAAAUUCGGUGAAAAUCAGGUCAACAGUGCAGUAGCACGUCCAUCGAUGAGUUAUUGA
.....((((....((.(((.(((.(((...))).))).))).)).......(((....))).)))).......(((((((.((((....)))).))))))). ( -26.60)
>consensus
AGAAAGACCAAAGGAGCUGCCGCAGAUUGUGUCAUCGAGGGUUCGAAAUUUGGUGAAAAUCAGGUCAACAGUGCAGUAGCACGUCCAUCGAUGAGUUAUUGA
.....((((......((....)).((((...((((((((.........)))))))).)))).)))).......(((((((.((((....)))).))))))). (-25.92 = -26.04 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:49 2006