Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,817,497 – 22,817,606 |
Length | 109 |
Max. P | 0.672484 |
Location | 22,817,497 – 22,817,606 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.12 |
Mean single sequence MFE | -17.87 |
Consensus MFE | -14.12 |
Energy contribution | -14.48 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.79 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.672484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22817497 109 - 27905053 AAGAAGGCAACUGCAAACCAAACAUGCAAAUCAUGCUUAAAAAAAGUUUAUAAAAAAAAGCAGAUCACAAGUAGAUGUUAUAUAUUUAACUGGGGCUUCAGCCCACACU .....((((.((((...........(((.....))).........((((........)))).........)))).)))).............((((....))))..... ( -17.40) >DroSec_CAF1 26429 104 - 1 AAAAAGGCAACUGCAAACCAAACAUGCAAAUCAUGCUCCAAA-AAAUUUAUAAAA-AA---AGUUCGCAAGUAGAUGUUAUAUAUUUAACUGGGACUACAGCCCACACU .....(((...((((.........))))..............-............-..---(((((.((..(((((((...)))))))..)))))))...)))...... ( -15.20) >DroSim_CAF1 26817 105 - 1 AAAAAGGCAACUGCAAGCAAAACAUGCAAAUCAUGCUCCAAA-AAGUUUAUAAAAAAA---AGAUCGCAAGUAGAUGUUAUAUAUUUAACUGGGGCUUCAGCCCACACU .....(((...((((.(.....).))))......((((((..-((((.(((((.....---....(....)......))))).))))...))))))....)))...... ( -19.56) >DroEre_CAF1 26444 105 - 1 AAAAAGGCAGCUGCAAACAAAACAUGCAAAUCAUGCUCCAAA-AAGUUCAUUAAAAAA---AGAUCGCAAGUAGAUGUUAUAUAUUUAACUGGGGCUUCAGCCCACACU .....(((...((((.........))))......((((((..-...............---..(((.......)))((((......))))))))))....)))...... ( -18.00) >DroYak_CAF1 26656 105 - 1 AAAAAGGCAACUGCAAACGAAACAUGCAAAUCAUGCUUCAAA-AAGUUCAUAAAAAAA---AGAUCGCAGGUAGAUGUUAUAUAUUUAACUGGGGCUUCAGCCCACACU ....((....))......(((.((((.....)))).)))...-...............---......(((.(((((((...))))))).)))((((....))))..... ( -19.20) >consensus AAAAAGGCAACUGCAAACAAAACAUGCAAAUCAUGCUCCAAA_AAGUUUAUAAAAAAA___AGAUCGCAAGUAGAUGUUAUAUAUUUAACUGGGGCUUCAGCCCACACU .....(((...((((.........))))......((((((.......................(((.......)))((((......))))))))))....)))...... (-14.12 = -14.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:48 2006