Locus 8544

Sequence ID 3R_DroMel_CAF1
Location 22,815,942 – 22,816,039
Length 97
Max. P 0.865159
window13731

overview

Window 1

Location 22,815,942 – 22,816,039
Length 97
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 73.10
Mean single sequence MFE -29.53
Consensus MFE -10.36
Energy contribution -12.17
Covariance contribution 1.81
Combinations/Pair 1.33
Mean z-score -2.27
Structure conservation index 0.35
SVM decision value 0.85
SVM RNA-class probability 0.865159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22815942 97 + 27905053
GCUUUUUU----CCACGACUGACGAUUUCUUUCAUCGCCUGAACU------UGUUC-AAGGCGAGAG------AGGAAGAAAAACG--CUAGUGAUAAGUUAUCAAGAGUUAACUG
((.(((((----(..((.....)).((((((((.(((((((((..------..)))-.)))))))))------))))))))))).)--)........(((((........))))). ( -28.00)
>DroPse_CAF1 28386 109 + 1
GCUGUUUGGUUGUUACUU-UUCCCUCCUCUUUCGUUGCU------AGCAGAUGUGGGAAGGGGAGGAGCCGGUAGAGGGGAAGGCGAAGUACUGAUAAGCCGGCAGGCAAAAGCUG
(((..(..((..(..(((-((((((((((((((.((.((------.((....)).)).)).)))))))......))))))))))..)...))..)...(((....)))...))).. ( -35.50)
>DroSec_CAF1 24873 97 + 1
GCUUUUUU----CCACGACUGACGAUUGCUUUCAUCGCCUGAACU------UGUUC-AAGGCGAGAG------AGGAAGAAAGACG--CUAGUGAUAAGUUAUCAAGAGUUAAAUG
.(((((((----((.((.....)).....((((.(((((((((..------..)))-.)))))))))------))))))))))..(--((..(((((...)))))..)))...... ( -29.30)
>DroSim_CAF1 25240 97 + 1
GCUUUUUU----CCACGACUGACGAUUUCUUUCAUCGCCUGAACU------UGUUC-AAGGCGAGAG------AGGAAGAAAGCCG--CUAGUGAUAAGUUAUCAAGAGUUAAAUG
((((((((----((.((.....)).....((((.(((((((((..------..)))-.)))))))))------))))))))))).(--((..(((((...)))))..)))...... ( -32.20)
>DroEre_CAF1 24895 89 + 1
GCUUUUUU----CCACGUCUGCCGAUUUCUUUCAUCGC------U------UGUUC-AAGGCGAGAA------AGAAAGAAAGGCG--CUAGUGAUAAGUUAUCA--AGUUAAAUG
........----.(((...((((..((((((((.((((------(------(....-.)))))))))------)))))....))))--...)))...........--......... ( -26.20)
>DroYak_CAF1 25073 94 + 1
GCUUUUUU----CCACGUCUGCCGAUUUCUUUCAUCGCCUGAACU------UGUUC-AAGG-GAAAA------AGAAAGAAAGACG--CUGGUGAUAAGCUAUAU--AGUUAAAUG
((((.((.----((((((((.....(((((((..((.((((((..------..)))-.)))-)).))------)))))...)))))--.))).)).)))).....--......... ( -26.00)
>consensus
GCUUUUUU____CCACGACUGACGAUUUCUUUCAUCGCCUGAACU______UGUUC_AAGGCGAGAA______AGAAAGAAAGACG__CUAGUGAUAAGUUAUCAAGAGUUAAAUG
.............(((.........((((((((.((((((((((........))))..))))))..........)))))))).........)))...................... (-10.36 = -12.17 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:44 2006