| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,814,842 – 22,814,977 |
| Length | 135 |
| Max. P | 0.995426 |
| Location | 22,814,842 – 22,814,937 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 96.42 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -21.90 |
| Energy contribution | -22.50 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.89 |
| SVM decision value | 2.57 |
| SVM RNA-class probability | 0.995426 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22814842 95 + 27905053 CAUGAUCCAGAAAUUUCAGUUUACUCAGCGACUGUGCAAUGUAGUUGCUGAAACAGAUCGGCAGCUAUGUAUAGAUAGAUCAAUAUUGUAACAGA ..(((((...........(((.....)))..(((((((...((((((((((......)))))))))))))))))...)))))............. ( -24.80) >DroSec_CAF1 23824 95 + 1 CAUGAUCCAGAAAUUUCAGUUUGCUCAGCGACUGUGCAAUGUAGUUGCUGAAACAGAUCGGCAGCUAAGUAUAGAUAGAUCAAUAUUGUAACAGA ..(((((.............((((...))))((((((....((((((((((......)))))))))).))))))...)))))............. ( -25.10) >DroSim_CAF1 24158 95 + 1 CAUGAUCCAGAAAUUUCAGUUUGCUCAGCGACUGUGCGAUGUAGUUGCUGAAACAGAUCGGCAGCUAAGUAAAGAUAGAUCAAUAUUGUAACAGA ..(((((.........(((((.((...)))))))(((....((((((((((......)))))))))).)))......)))))............. ( -23.70) >DroEre_CAF1 23780 95 + 1 CAUGAUCCAGAAAUUUCAGUUUGCUCAGCGACUGCGCAAUGUAGUUGCUGAAACAGACCGGCAGCUAAGUAUAGAUAGAUCAAUAUUGUAACAAA ..(((((........((.(((((.(((((((((((.....)))))))))))..))))).))...(((....)))...)))))............. ( -24.80) >DroYak_CAF1 23986 95 + 1 CAUGAUCCAGAAAUUUCAGUUUGCUCAGCGACUGUGCAAUGUAGUUGCUGAAACAGAUCGGCAGCUAAGUAUAGAUAGAUCAAUGUUGUAACAAA ..(((((.............((((...))))((((((....((((((((((......)))))))))).))))))...)))))............. ( -25.10) >consensus CAUGAUCCAGAAAUUUCAGUUUGCUCAGCGACUGUGCAAUGUAGUUGCUGAAACAGAUCGGCAGCUAAGUAUAGAUAGAUCAAUAUUGUAACAGA ..(((((...........(((.....)))..((((((....((((((((((......)))))))))).))))))...)))))............. (-21.90 = -22.50 + 0.60)
| Location | 22,814,882 – 22,814,977 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 93.02 |
| Mean single sequence MFE | -23.46 |
| Consensus MFE | -22.62 |
| Energy contribution | -22.86 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22814882 95 + 27905053 GUAGUUGCUGAAACAGAUCGGCAGCUAUGUAUAGAUAGAUCAAUAUUGUAACAGACACACCCACCUAUAGUACUCGUAGUCGUAGCGCAGGUAUG (((((((((((......)))))))))))((...((((......))))...))..........((((...(..((((....)).))..)))))... ( -20.70) >DroSec_CAF1 23864 95 + 1 GUAGUUGCUGAAACAGAUCGGCAGCUAAGUAUAGAUAGAUCAAUAUUGUAACAGACCCACUCACCUGUAGUACUCGUAGUCGUAGCGCAGGUAAG .((((((((((......)))))))))).((...((((......))))...)).......((.((((((..(((........)))..)))))).)) ( -24.80) >DroSim_CAF1 24198 95 + 1 GUAGUUGCUGAAACAGAUCGGCAGCUAAGUAAAGAUAGAUCAAUAUUGUAACAGACCCACCCACCUGUAGUACUCGUAGUCGUAGCGCAGGUAAG .((((((((((......)))))))))).((...((((......))))...))..........((((((..(((........)))..))))))... ( -24.40) >DroEre_CAF1 23820 91 + 1 GUAGUUGCUGAAACAGACCGGCAGCUAAGUAUAGAUAGAUCAAUAUUGUAACAAACC----CACCUGUAGUACUCGUAGUCGUAGCGCAGGUAAC .(((((((((........))))))))).((...((((......))))...)).....----.((((((..(((........)))..))))))... ( -23.00) >DroYak_CAF1 24026 91 + 1 GUAGUUGCUGAAACAGAUCGGCAGCUAAGUAUAGAUAGAUCAAUGUUGUAACAAACC----CACCUGUAGUACUCGUAGUCGUAGCGCAGGUAAC .((((((((((......)))))))))).((...((((......))))...)).....----.((((((..(((........)))..))))))... ( -24.40) >consensus GUAGUUGCUGAAACAGAUCGGCAGCUAAGUAUAGAUAGAUCAAUAUUGUAACAGACCCAC_CACCUGUAGUACUCGUAGUCGUAGCGCAGGUAAG .((((((((((......)))))))))).((...((((......))))...))..........((((((..(((........)))..))))))... (-22.62 = -22.86 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:43 2006