Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,802,173 – 22,802,274 |
Length | 101 |
Max. P | 0.945682 |
Location | 22,802,173 – 22,802,274 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 79.12 |
Mean single sequence MFE | -40.90 |
Consensus MFE | -29.45 |
Energy contribution | -29.17 |
Covariance contribution | -0.29 |
Combinations/Pair | 1.28 |
Mean z-score | -2.19 |
Structure conservation index | 0.72 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.945682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22802173 101 - 27905053 ACAC---GUUUUAUUUGAAGCGUCGCUGCGGCAAUGUUGGGCUCUCGGGCGGCGUGUCACCGCCAGC--UCCUGC-GCCGCCUCCCACGGCGAUAUGCUGCAGCGAA ...(---(((((....))))))(((((((((((.((((.(((.(..((((((((......)))).))--))..).-)))(((......)))))))))))))))))). ( -48.70) >DroPse_CAF1 11937 104 - 1 AGAA---AUAUUAUUUAAAGCGUCGAUGCGGCAUGGUUGGACUCUCGGGCGGUGUAUCCCCGCUGGCAGUGCUGCUGCCACCCCCAAUGACAAUCUGUUGCAGCGAA ....---...............(((.(((((((.(((((.......((((((.......))))((((((.....)))))).)).......)))))))))))).))). ( -34.04) >DroSim_CAF1 11138 101 - 1 ACAC---GUUUUAUUUGAAGCGUCGCUGCGGCAAUGUUGGGCUCUCGGGCGGCGUAUCACCGCCAGC--UCCUGC-UCCGCCACCGACGGCGAUAUGCUGCAGCGAA ...(---(((((....))))))(((((((((((.....((((....((((((((......)))).))--))..))-))((((......))))...))))))))))). ( -47.40) >DroWil_CAF1 9668 107 - 1 CCAAAUAUUAUUAUUUAAGUCGUCGCUGUGGCAAUGUUGGACUCUCUGGCGGUGUGUCUCCGCUGCCAGUGCUGCUGCCGGCUCCAACGACAAUAUGUUGCAGCGAA ..(((((....)))))......((((((..(((.(((((((....(((((((((......))))))))).((((....)))))))))))......)))..)))))). ( -41.10) >DroAna_CAF1 11066 101 - 1 AAAA---GUAUUAUUUAAAGCGUCGCUGCGGCAAAGUCGGACUCUCAGGCGGUGUGUCCCCGCUGGC--ACUACC-GCCGCCCCCAACGACGAUUUGUUGCAGGGAG ....---...............((.(((((((((.((((........(((((((((((......)))--)).)))-)))........))))...))))))))).)). ( -40.09) >DroPer_CAF1 12698 104 - 1 AGAA---AUAUUAUUUAAAGCGUCGAUGCGGCAUGGUUGGACUCUCGGGCGGUGUAUCCCCGCUGGCAGUGCUGCUGCCACCCCCAAUGACAAUCUGUUGCAGCGAA ....---...............(((.(((((((.(((((.......((((((.......))))((((((.....)))))).)).......)))))))))))).))). ( -34.04) >consensus ACAA___GUAUUAUUUAAAGCGUCGCUGCGGCAAUGUUGGACUCUCGGGCGGUGUAUCCCCGCUGGC__UCCUGC_GCCGCCCCCAACGACAAUAUGUUGCAGCGAA ......................(((((((((((.(((((........(((((.......)))))((((.......))))...........)))))))))))))))). (-29.45 = -29.17 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:34 2006