Locus 8538

Sequence ID 3R_DroMel_CAF1
Location 22,796,484 – 22,796,586
Length 102
Max. P 0.576570
window13719

overview

Window 9

Location 22,796,484 – 22,796,586
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 84.31
Mean single sequence MFE -31.15
Consensus MFE -24.29
Energy contribution -25.73
Covariance contribution 1.44
Combinations/Pair 1.09
Mean z-score -1.71
Structure conservation index 0.78
SVM decision value 0.09
SVM RNA-class probability 0.576570
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22796484 102 + 27905053
GCAUCAUGGCCAAACUAUUGCAUCUGGGCAACUCGCCCAAGCUGCGACGCGAAGGUGUCAGGUUGGUCAAUCCCUUAAGUACAAUCCGAAACGAAAUCUAAU
......(((((((.((...(((.((((((.....)))).)).)))(((((....))))))).)))))))................................. ( -31.30)
>DroSec_CAF1 5588 102 + 1
GCAUCAUGGCCAAGCUACUGCAUCUGGGCAACUCGCCCAAGCUGCGACGCGAAGGUGUCAGGUUGGUAAAUCUCUUAAGUACAAUCCGAAACGAAACCUAAU
........(((((.((...(((.((((((.....)))).)).)))(((((....))))))).)))))................................... ( -29.80)
>DroSim_CAF1 5445 102 + 1
GCAUCAUGGCCAAGCUACUGCAUCUGGGCAACUCGCCCAAGCUGCGACGCGAAGGUGUCAGGUUGGUAAAUCUGUUAAGUACAAUACGAAACGAAACCUAAU
...((...(((((.((...(((.((((((.....)))).)).)))(((((....))))))).)))))......(((..(((...)))..)))))........ ( -31.30)
>DroEre_CAF1 5687 102 + 1
GCAUCAUGGCCAAGCUACUGCAUCUGGGCAACUCGCCCAAGCUGCGACGCGAAGGUGUCAGGUUGGUCAAUCCCUUAACAACAAUUUGAAGCGCCCUCUAAC
((....(((((((.((...(((.((((((.....)))).)).)))(((((....))))))).))))))).........(((....)))..)).......... ( -35.00)
>DroYak_CAF1 5552 102 + 1
GCAUCAUGGCCAAGCUACUGCAUCUGGGCAACUCGCCCAAGCUGCGACGCGAAGGUGUCAGGUUGGUCAAUCCCUUAACAACAAUUUGAAGCGCACUCUAAC
((....(((((((.((...(((.((((((.....)))).)).)))(((((....))))))).))))))).........(((....)))....))........ ( -35.10)
>DroPer_CAF1 6852 98 + 1
GCAUCAUGGCCAAGCUGUUGCAUCUGGGCAACUCCCCAAAGCUGAGAAGGGAAGGCGUCAGGUGAGUUCCAC--ACAACACCGAAUUG--GUCUCCUCUAAU
.......((((((..((((((((((((((...((((............))))..)).))))))).(.....)--.))))).....)))--)))......... ( -24.40)
>consensus
GCAUCAUGGCCAAGCUACUGCAUCUGGGCAACUCGCCCAAGCUGCGACGCGAAGGUGUCAGGUUGGUCAAUCCCUUAACAACAAUUCGAAACGAAAUCUAAU
......(((((((.((...(((.((((((.....)))).)).)))(((((....))))))).)))))))................................. (-24.29 = -25.73 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:33 2006