| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,791,508 – 22,791,628 |
| Length | 120 |
| Max. P | 0.548296 |
| Location | 22,791,508 – 22,791,628 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.89 |
| Mean single sequence MFE | -34.40 |
| Consensus MFE | -21.54 |
| Energy contribution | -21.38 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22791508 120 - 27905053 CACGAAGACCAUGUUGCCACUGAUUGUUUCCAAUCAGAUAAAUAAUUGCUUCUUCGGCGGCCUGGUACUUGCAAAUUUGAUAUUUGCCGCGGUGAAUCGUAAGCUGCACGGCAUUGUCAA ....(((((((.((((((.(((((((....))))))).(((....))).......)))))).)))).)))......((((((..(((((((((.........)))))..)))).)))))) ( -36.40) >DroPse_CAF1 803 120 - 1 CGUAAAGACCAUGCUGCCUCUGAUAAUAUCCAAUCAGGUUAACAACUGCUUCUUUGGUGGCCUGGUGAUUUCAAACUUAAUGAUUGCCGCAAUCAAUAAGCGGAUACGCAGCAUUGUAAG .......((.(((((((.((((((........)))))).......((((((..(((((.((..((..(((...........)))..)))).))))).))))))....))))))).))... ( -34.60) >DroSec_CAF1 717 120 - 1 CACGAAGACCAUGUUGCCACUGAUUGUGUCGAACCAGAUAAAUAAUUGCUUCUUCGGCGGCCUGGUAAUUGCAAAUUUGAUAAUUGCCGCGGUGAAUCAAAAGUUGCACGGCAUUGUCAA ......(((.(((((((.(((((((.(((((((..((.(((....)))))..)))))))((((((((((((((....)).))))))))).))).))))...))).)))..)))).))).. ( -31.50) >DroSim_CAF1 569 120 - 1 CACGAAGACCAUGUUGCCACUGAUUGUGUCGAAUCAGAUAAAUAAUUGCUUCUUCGGCGGCCUGGUAAUUGCAAAUUUGAUAAUUGCCGCGGUGAAUCGAAAGUUGCACGGCAUUGUCAA ..(((..((((.((((((.((((((......)))))).(((....))).......)))))).))))..))).....((((((((.((((..(..(..(....))..).)))))))))))) ( -34.80) >DroYak_CAF1 650 120 - 1 CGUGAAGACCAUGUUGCCGCUGAUUGUAUCGAACCAGAUAAAUAAUUGCUUCUUCGGCGGCCUGGUAAUUGCAAAUUUGGUGAUUGCUGCGCUAAAUCGAAAGUUGCACGGCAUUGUUAA .(..(..((((.(((((((..((...((((......))))..........))..))))))).))))..)..)....((((..((.((((.((.....(....)..)).))))))..)))) ( -34.52) >DroPer_CAF1 1476 120 - 1 CGUAAAGACCAUGCUGCCUCUGAUAAUAUCCAAUCAGGUUAACAACUGCUUCUUUGGUGGCCUGGUGAUUUCAAACUUAAUGAUUGCCGCAAUCAAUAAGCGGAUACGCAGCAUUGUAAG .......((.(((((((.((((((........)))))).......((((((..(((((.((..((..(((...........)))..)))).))))).))))))....))))))).))... ( -34.60) >consensus CACGAAGACCAUGUUGCCACUGAUUGUAUCCAAUCAGAUAAAUAAUUGCUUCUUCGGCGGCCUGGUAAUUGCAAAUUUGAUAAUUGCCGCGGUGAAUCAAAAGUUGCACGGCAUUGUCAA .......((((.((((((.((((((......))))))((.....)).........)))))).))))..........((((((((.((((...................)))))))))))) (-21.54 = -21.38 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:32 2006