| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,786,550 – 22,786,640 |
| Length | 90 |
| Max. P | 0.508376 |
| Location | 22,786,550 – 22,786,640 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 77.39 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -16.61 |
| Energy contribution | -18.03 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22786550 90 - 27905053 AUAAUCAUCAUAAGCGCUGGAGGAGAUUAACGCUAGCGCUUAGUUUGUCGCCUC-UC-UGGGCAGGAGUGAGGGGUGAGCCCA--AUGAGCAAG ....((((..((((((((((.(........).)))))))))).....(((((((-((-...........))))))))).....--))))..... ( -31.30) >DroSec_CAF1 10222 92 - 1 AUAAUCAUCAUAAGCGCUGGAGGAGAUUAACGCUAGCGCUUAGUUUGACGCCUCCCUCCCGGCAGGAGUCAGGGGUGGGCCCA--AUGAGCAAG ....(((...((((((((((.(........).))))))))))...))).(((..((.((.(((....))).))))..)))...--......... ( -33.80) >DroSim_CAF1 10508 91 - 1 AUAAUCAUCAUAAGCGCUGGAGGAGAUUAACGCUAGCGCUUAGUUUGACGCCUCCUU-UGGGCAGGAGUCAGGGGUGGGCCCA--AUGAGCAAG ....((((..((((((((((.(........).))))))))))..(((((.(((((..-..)).))).)))))(((....))).--))))..... ( -33.60) >DroEre_CAF1 10634 93 - 1 AUAAUCCUCCCAAGCGCAGGAGGAGAUUAACGCCAGCGCUUAGUUUGACGCCUGCCU-UGGGCAGGAAAAAGGUGGGGCCCCCGAAUAAGUAAA ....((((((((((.(((((.(.(((((((((....)).)))))))..).)))))))-)))).))))......((((...)))).......... ( -34.10) >DroYak_CAF1 10411 91 - 1 AUAAUCAUCCUAAGCGCAGAAGGAGAUUAACGCUAGCGCUUAGCCUGACGCCUCCCU-GGGGCAGGAGAAAGGGGUGGGCCCU--AUGAGUGAG ....((((.((((((((....(........)....))))))))((((.(.((.....-)).))))).....((((....))))--....)))). ( -28.90) >DroAna_CAF1 10417 79 - 1 AUAAUCAUCAUAAGCGCCAGGGAAGAUUAACGCUCGCACUUUGUUUGACGCCUCCCA-AGGGAAAGGACGAGGCGCAGGU-------------- .............(((((.(((..........))).............(((((((..-..)))..)).)).)))))....-------------- ( -18.60) >consensus AUAAUCAUCAUAAGCGCUGGAGGAGAUUAACGCUAGCGCUUAGUUUGACGCCUCCCU_UGGGCAGGAGUAAGGGGUGGGCCCA__AUGAGCAAG ....(((...(((((((.((.(........).)).)))))))...))).((((......)))).........(((....)))............ (-16.61 = -18.03 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:29 2006