Locus 8534

Sequence ID 3R_DroMel_CAF1
Location 22,781,963 – 22,782,059
Length 96
Max. P 0.653507
window13714

overview

Window 4

Location 22,781,963 – 22,782,059
Length 96
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 90.58
Mean single sequence MFE -30.03
Consensus MFE -20.48
Energy contribution -20.28
Covariance contribution -0.20
Combinations/Pair 1.14
Mean z-score -2.65
Structure conservation index 0.68
SVM decision value 0.25
SVM RNA-class probability 0.653507
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22781963 96 - 27905053
CUAACAAUAUGCCAACAAUCGUUGGGAGUUAGAAAAGUUGGUAAUGCGGGU--GUUACAGCAAUUUGC---UGCAAGGUGGAUUGCCAAUUUGUUUACAGC
(((((....(.(((((....))))).))))))..(((((((((((.((..(--.((.((((.....))---)).)).))).)))))))))))......... ( -26.70)
>DroSec_CAF1 5562 98 - 1
CUAACAAUAUGCCAACAAUUGUUGGGGGGUAGAAAAGUUGGUAAUGCGGGU--GUUACAGAAAUUUGCACUAGCAAGGUGGAUUGCCAAUUUGUUUACAG-
((((((((.((....))))))))))...(((((.(((((((((((((.(((--((...(....)..))))).))).......)))))))))).)))))..- ( -27.51)
>DroSim_CAF1 5622 99 - 1
CUAACAAUAUGCCAACAAUUGUUGGGGGGUAAAAAAGUUGGUAAUGCGGGU--GUUACAGCAAUUUGCACUCGCAAGGUGGAUUGCCAAUUUGUUUACAGC
((((((((.((....))))))))))...(((((.(((((((((((((((((--((...........))))))))).......)))))))))).)))))... ( -32.11)
>DroEre_CAF1 5991 99 - 1
CUAACAAUAUGCCAACAAUUGUUGGUAGUUGCGAAAGUUGGUAAUGCGGGU--GUUACAGAAAUUUGCACUCGCAAGGUGAAUUGCCAAUUUGUUUAUAGC
....((((.(((((((....)))))))))))...(((((((((((((((((--((...(....)..))))))))).......))))))))))......... ( -31.61)
>DroYak_CAF1 5793 101 - 1
CUAACAAUAUGCCAGCCAUUGUUGGUAGUUAGAAAAGUUGGUAAUGCGGGUGUGUUAGAGCAAUUUGCACUCGCAAGGUGGAUUGCCAAUUUGUUUACAGC
(((((....(((((((....))))))))))))..(((((((((((((((((((...(((....)))))))))))).......))))))))))......... ( -32.21)
>consensus
CUAACAAUAUGCCAACAAUUGUUGGGAGUUAGAAAAGUUGGUAAUGCGGGU__GUUACAGCAAUUUGCACUCGCAAGGUGGAUUGCCAAUUUGUUUACAGC
...........(((((....)))))....((((.(((((((((((.(((........).....(((((....))))).)).))))))))))).)))).... (-20.48 = -20.28 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:28 2006