Locus 8533

Sequence ID 3R_DroMel_CAF1
Location 22,775,112 – 22,775,202
Length 90
Max. P 0.876868
window13713

overview

Window 3

Location 22,775,112 – 22,775,202
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 77.75
Mean single sequence MFE -36.01
Consensus MFE -21.03
Energy contribution -21.20
Covariance contribution 0.17
Combinations/Pair 1.52
Mean z-score -1.98
Structure conservation index 0.58
SVM decision value 0.90
SVM RNA-class probability 0.876868
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22775112 90 - 27905053
GGUGUCAUAGGAGGACUUU-----GUGGCUU-CUUAGGUG---CACCUCCCUUGCUGGCCUGCAUCUUAUUUCCCAAGGCUUCUGCGGCUGACACCAAG
(((((((..(((((.((((-----(.((...-...(((((---((....((.....))..))))))).....)))))))))))).....)))))))... ( -32.80)
>DroSec_CAF1 15560 93 - 1
GGUGUCAUGGGAGGAUUUU-----GUGGCUU-CUUUGGAGCAGCACCUCCCUUGGUGGCCUGCAACUUAUUACCCAAGGCCUCGGCGGCUGACACCAAG
(((((((.((((((....(-----((.((((-.....)))).)))))))))...(.(((((...............))))).)......)))))))... ( -38.06)
>DroSim_CAF1 11023 93 - 1
GGUGUCAUAGGAGGACUUU-----GUGGCUU-CUUGGGAGCAGCACCUCCCUUGGUGGCCUGCAACUUAUUACCCAAGGCCUCGGCGGCUGACACCAAG
(((((((...((((.((((-----(.((...-...((..((((((((......))))..))))..)).....)))))))))))......)))))))... ( -35.60)
>DroEre_CAF1 23460 90 - 1
GGUGUCGAAGGCGGACUUU-----GAGGCUU-CUUGGGAG---CAGCUCCCUUGGUGGCCUGCAACUUACUUCCCAAGGCCUCAGCGGCCGACACCAAG
((((((...(((.(....(-----(((((..-((((((((---((((..(....)..).))))........))))))))))))).).)))))))))... ( -41.40)
>DroYak_CAF1 24269 90 - 1
GGUGUCGAGGGCGGACUUU-----GUGGCUU-CUUGGGAG---CACCUCCCUUGUUGGCCUGCAGCUUAUUGCCCAAUGCCUCUGCGGCUGACACCAAG
(((((((.((((((...((-----((((((.-(..(((((---...)))))..)..)))).))))....))))))...(((.....))))))))))... ( -39.90)
>DroAna_CAF1 14354 96 - 1
AUUGGUUUGGGUUGAAUGUUCGGAGCGGAUUGCUUGGAUA---AACCGGUUUUGGGGGCUUGCAUCUUGUUGCCCAGUGCCUCGGCAGCAGUUACCAAU
((((((....((((.....((.((((.....)))).))..---..((((......((((..((.....)).))))......))))))))....)))))) ( -28.30)
>consensus
GGUGUCAUAGGAGGACUUU_____GUGGCUU_CUUGGGAG___CACCUCCCUUGGUGGCCUGCAACUUAUUACCCAAGGCCUCGGCGGCUGACACCAAG
((((((..................((((((.....(((((......))))).....)))).))..............((((.....))))))))))... (-21.03 = -21.20 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:27 2006