| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,769,419 – 22,769,520 |
| Length | 101 |
| Max. P | 0.541893 |
| Location | 22,769,419 – 22,769,520 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.54 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -17.11 |
| Energy contribution | -17.53 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22769419 101 - 27905053 AUAA-----GUUUUUGUAUUGUAUUUCAGUUACAAGCUUACGGAUUGUUUUUGGGAUCACGCAUCCACUCGCGGAACUUCAUCUGCGCCUUUUGGGUGCAGCGAUC ....-----....((((...((((..(((..((((.(.....).))))..)))..)).))(((((((..((((((......)))))).....))))))).)))).. ( -27.60) >DroVir_CAF1 10268 98 - 1 AUAUAUCUCGCUAACG-----GAGUAGAG---UCUACUCACGGAUUCUUUUUGGCAUCGCGCAUCCAUUCGCGGAACUUCAUUUGGGCCACCUGUGUGCAGCGAUC .......(((((.(((-----.((.((((---(((......)))))))...((((.(((((........)))))..((......)))))).)).)))..))))).. ( -27.10) >DroSec_CAF1 9734 96 - 1 AUAC-----GUUUUUG-----CAUUUCAGGUACAAACUUACGGAUUGUUUUUGGGAUCACGCAUCCACUCGCGGAACUUCAUACGCGCCUUUUGGGUGCAGCGAUC ....-----....(((-----(((..((((.((((.(.....).)))).))))..))...(((((((..((((..........)))).....))))))).)))).. ( -25.50) >DroSim_CAF1 5228 96 - 1 AUAA-----GAUCUUG-----CAUUUCAGGUACAAACUUACGGAUUGUUUUUGGGAUCACGCAUCCACUCGCGGAACUUCAUCUGCGCCUUUUGGGUGCAGCGAUC ....-----((((..(-----(((..((((.((((.(.....).)))).))))..))...(((((((..((((((......)))))).....))))))).)))))) ( -28.30) >DroEre_CAF1 17612 96 - 1 AUGA-----GUUCUUA-----CAUUUAAGGCACAGACUUACGGAUUGUUUUUCGCAUCGCGCAUCCACUCGCGGAACUUCAUCUGCGCCUUUUGGGUGCAGCGAUC .(((-----(((((((-----....)))).....))))))((((......)))).((((((((((((..((((((......)))))).....))))))).))))). ( -28.20) >DroYak_CAF1 18419 96 - 1 UAUA-----GUUUUUA-----UAGUUAAAGCCUAUACUUACGGAUUGUUUUUGGGAUCGCGCAUCCACUCGCGGAACUUCAUCUGCGCCUUUUGGGUGCAGCGAUC ((((-----(.(((((-----....))))).)))))....((((.....)))).(((((((((((((..((((((......)))))).....))))))).)))))) ( -30.70) >consensus AUAA_____GUUUUUG_____CAUUUCAGGUACAAACUUACGGAUUGUUUUUGGGAUCACGCAUCCACUCGCGGAACUUCAUCUGCGCCUUUUGGGUGCAGCGAUC ..........................................(((((((....(.....)(((((((..((((((......)))))).....)))))))))))))) (-17.11 = -17.53 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:24 2006