Locus 8530

Sequence ID 3R_DroMel_CAF1
Location 22,764,385 – 22,764,475
Length 90
Max. P 0.527636
window13709

overview

Window 9

Location 22,764,385 – 22,764,475
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 87.80
Mean single sequence MFE -16.48
Consensus MFE -13.11
Energy contribution -13.00
Covariance contribution -0.11
Combinations/Pair 1.18
Mean z-score -2.00
Structure conservation index 0.80
SVM decision value -0.01
SVM RNA-class probability 0.527636
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22764385 90 - 27905053
GCUUGCCAAAACGUUUAGCAAAAAUGCAAAACGGAA--ACGCGAAAUAAAGCAAAUACCCGGCCAAACUUAAUAGGCAAACCACACCCGUU--U
..(((((....(((((.(((....))).)))))...--..((........))......................)))))............--. ( -16.70)
>DroSec_CAF1 4712 90 - 1
GCUUGCCAAAACGUUUAGCAGAAAUGCAAAACGGAA--ACGCGAAAUAAAGCAAAUACCCGGCCAAACUUAAUAGGCAAACCACACCCGUU--U
..(((((....(((((.(((....))).)))))...--..((........))......................)))))............--. ( -19.50)
>DroSim_CAF1 216 90 - 1
GCUUGCCAAAACGUUUAGCAGAAAUGCAAAACGGAA--ACGCGAAAUAAAGCAAAUACCCGGCCAAACUUAAUAGGCAAACCACACCCGUU--U
..(((((....(((((.(((....))).)))))...--..((........))......................)))))............--. ( -19.50)
>DroEre_CAF1 12618 89 - 1
GCUGGCCAAACCGUUUAGCACAAAUGCAAAACAGAA--UCGCGAAAUAAAGCAAAUACCCGGCCAAACUUGAUAGGCGAACCACACCCGC---U
..(((((.....((((.(((....))).))))....--..((........))........))))).........((((.........)))---) ( -19.60)
>DroYak_CAF1 13298 94 - 1
GCUUGCCAAAACGUUUAGCACAAAUGCAAAACGGAACACCGCGAAAUAAAGCAAAUACCCGGCCAAACUUAAAAAGCGAACCACACCCGUUUUU
....(((....(((((.(((....))).))))).......((........))........)))........(((((((.........))))))) ( -17.10)
>DroAna_CAF1 2802 86 - 1
GCUUGCCAAAACGUUUAGCA-AAAUGCAAAACGAAA--CCAUGAAACUAAAUAAAUACCCGACU-AACUUAAUAAUCAAACCACACCCU----G
...........(((((.((.-....)).)))))...--..........................-........................----. (  -6.50)
>consensus
GCUUGCCAAAACGUUUAGCACAAAUGCAAAACGGAA__ACGCGAAAUAAAGCAAAUACCCGGCCAAACUUAAUAGGCAAACCACACCCGUU__U
(((((((....(((((.(((....))).))))).......((........))........)))..........))))................. (-13.11 = -13.00 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:23 2006