Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,890,764 – 2,890,884 |
Length | 120 |
Max. P | 0.907964 |
Location | 2,890,764 – 2,890,884 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.38 |
Mean single sequence MFE | -39.35 |
Consensus MFE | -19.45 |
Energy contribution | -19.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.44 |
Mean z-score | -2.13 |
Structure conservation index | 0.49 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.907964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2890764 120 - 27905053 UUAUCGCUUUGGACUACGACCUGCAUGUGGAGUGCGAGGUGAGCGGUCCGCACCGCAAUCUCACUGGCAAGGUGCCAAUCACCUUGGGCACUAUUCCAUUGGCUGGCGUACGGCCACCUA .........(((..((((.((.((..((((((((((((((..(((((....))))).))))).....(((((((.....))))))).))))...)))))..)).))))))...))).... ( -46.30) >DroVir_CAF1 3884 118 - 1 UAAUUGCUCUAGACUAUGAUUUGCAUGUGGAGUGCGAUGUAAGUGGACCACAUCGCAAUCUAACCGGCAAAGUGCCAAUUACCCUCGGCACAAUACCACUGGCUGCUUUAAAACCACA-- .....((.((((.......(((((...((((.((((((((.........)))))))).))))....)))))(((((..........))))).......))))..))............-- ( -33.30) >DroGri_CAF1 350 118 - 1 UCAUUUCUUUGGACUAUGACUUGCACGUGGAGUGCGUUGUUAGUGGACCACAUAGUAAUCUCACCGGUAAAGUGCCAAUUACACUUGGCACAAUACCACUGGCUUCCGUACAGCCACU-- ((((.((....))..)))).......((((.(((((..(((((((((((....((....))....)))...(((((((......)))))))....))))))))...)))))..)))).-- ( -37.50) >DroWil_CAF1 1759 120 - 1 UCAUUGCCUUGGAUUAUGAUGUGCAUGUCGAGUGCGAAGUGAGUGGAGCUCAUCGUAAUCUGUCGGGUAAAAUACCCAUAACAUUGGGCACUAUUCCAUUGGCUGGUAUUAAGCCACCAA ....(((((.((((((((((.(((((.....)))))....(((.....)))))))))))))...(((((...)))))........)))))........((((.((((.....)))))))) ( -36.70) >DroMoj_CAF1 348 118 - 1 UCAUCGCGUUGGACUAUGAUUUGCAUGUCGAGUGUGAUGUAAGUGGACCGCAUCGUAAUCUCACUGGCAAAGUGCCCAUCACGUUGGGCACCAUUCCGUUGGCUUCCGUAAAGCCACC-- .(((((((((.(((.(((.....)))))).)))))))))..((((((..((...))..)).))))((....(((((((......)))))))....))..((((((.....))))))..-- ( -38.20) >DroAna_CAF1 2407 119 - 1 UCAUCGCCCUUGACUACGAUCUGCAUGUAGAAUGUGAUGUUAGUGGGCCACAUAGAAAUCUCACUGGCAAGGUGCCUAUCACAUUAGGCACUAUUCCACUAUCGGGCGUGAAGCCGCUG- (((.(((((.....((((.((((....)))).))))..(.((((((((((...((....))...))))..((((((((......))))))))...)))))).)))))))))........- ( -44.10) >consensus UCAUCGCUUUGGACUAUGAUUUGCAUGUGGAGUGCGAUGUAAGUGGACCACAUCGUAAUCUCACUGGCAAAGUGCCAAUCACAUUGGGCACUAUUCCACUGGCUGCCGUAAAGCCACC__ .........(((..((((....((((.....))))...((.(((((............((.....))....(((((((......)))))))....))))).))...))))...))).... (-19.45 = -19.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:52 2006