| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,764,126 – 22,764,246 |
| Length | 120 |
| Max. P | 0.517890 |
| Location | 22,764,126 – 22,764,246 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.08 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -18.05 |
| Energy contribution | -18.38 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22764126 120 - 27905053 GCAGGCUUUGGAGACAUAAACCCCCGAUGGAGGUCCAUUGAAAACAUACUUUUGGCCAUUUUUGGUCUUCAGCUGACCGCCUGGAAAAUAUAUAAAACACACUUUAAUAACAAUUCAAUU .(((((..((....))...............((((..(((((...........(((((....))))))))))..)))))))))..................................... ( -24.90) >DroVir_CAF1 3460 103 - 1 GCAGGUCCUGGACACAUAAACACCCGAUGGUGGCCCAUUAAAAACGUAUUUCUGUCCAUUCUUGGUCUUAAGCUGACCACCUGUCAAAGAGAGAGACAA---UAGA-------------- ((((((..((((((.(((.......(((((....))))).......)))...)))))).....((((.......))))))))))...............---....-------------- ( -23.44) >DroGri_CAF1 6220 98 - 1 ACACGUCCUGGAGACAUAAACACCCGAUGGUGGGCCAUUGAACACAUAUUUCUGACCAUUUUUCGUCUUUAGCUGACCGCCUGGAACAA-AAGCAAUAA--------------------- ....(((((((((((.........((((((....))))))....((......))..........))))))))..)))............-.........--------------------- ( -17.70) >DroSec_CAF1 4459 117 - 1 GCAGGCUUUGGAGACAUAUACCCCCGAUGGGGGUCCAUUGAAAACGUACUUUUGGCCAUUUUUGGUCUUCAGCUGACCGCCUGGAAAAUAUAUAAAACACAAUUAAAUAACAAUUCA--- .(((((..((....))....(((.....)))((((..(((((...........(((((....))))))))))..)))))))))..................................--- ( -27.90) >DroEre_CAF1 12365 117 - 1 GCAGGGUUUGGAAACAUAGACCCCCGAUGGAGGUCCAUUGAAAACAUACUUUUGGCCAUUUUUGGUCUUCAGCUGACCGCCUGAAAAAUAUAUAAAACACGUUUUAAUAACAAUUC---U ...(((((((....))..))))).((((((....))))))(((((........(((((....)))))((((((.....).)))))...............)))))...........---. ( -28.60) >DroYak_CAF1 13044 116 - 1 ACAGGCUUUGGAAACAUAAACCCCGGAUGGAGGUCCAUUGAAAACAUACUUUUGGCCAUUCUUGGUCUUCAGCUGACCGCCUGGAAAAGACAUAAAACACGAUUUAAUAACAAGU----U .(((((..((....))...............((((..(((((...........(((((....))))))))))..)))))))))................................----. ( -25.20) >consensus GCAGGCUUUGGAGACAUAAACCCCCGAUGGAGGUCCAUUGAAAACAUACUUUUGGCCAUUUUUGGUCUUCAGCUGACCGCCUGGAAAAUAUAUAAAACAC__UUUAAUAACAAUU_____ .(((((..(((.............((((((....))))))....((......)).))).....((((.......)))))))))..................................... (-18.05 = -18.38 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:22 2006