Locus 8528

Sequence ID 3R_DroMel_CAF1
Location 22,758,893 – 22,758,999
Length 106
Max. P 0.951821
window13707

overview

Window 7

Location 22,758,893 – 22,758,999
Length 106
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 86.50
Mean single sequence MFE -28.80
Consensus MFE -20.15
Energy contribution -22.27
Covariance contribution 2.13
Combinations/Pair 1.04
Mean z-score -2.89
Structure conservation index 0.70
SVM decision value 1.42
SVM RNA-class probability 0.951821
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22758893 106 + 27905053
CUCCAUUGGAGUUCCUCGACACGUUCUGGCC--CGAGUUCACUAAACUCGUGGCCGAUGCGAUCAGUUCGUGGCUGGCUCCCCCUUCUCUCUUGCCUUUAUAAACAUU
.......((((((((.((((.(((..(((((--((((((.....)))))).)))))..)))....).))).))..))))))........................... ( -30.40)
>DroSec_CAF1 48509 105 + 1
CUCCAUUGGAGUUCCUCGACACGUUCUGGCCACCGAGUUCACUAAACUCGUGGCCGAUGCGAUCAGUU---GGCUGACUCCCCCCUCUCUCUAGCCUUUAUAAACAUU
.......((((((..(((((.(((..(((((((.(((((.....))))))))))))..)))....)))---))..))))))........................... ( -32.60)
>DroSim_CAF1 48629 105 + 1
CUCCAUUGGAGUUCCUCGACACGUUCUGGCCACCGAGUUCACUAAACUCGUGGCCGAUGCGAUCAGUU---GGCUGACUCCCCCCUCUCUCUAGCCUUUAUAAACAUU
.......((((((..(((((.(((..(((((((.(((((.....))))))))))))..)))....)))---))..))))))........................... ( -32.60)
>DroAna_CAF1 49359 90 + 1
CUCCAUUGAAGUUCCUCGACACGUUCUGGCC--CGAGUUCACUAAACUC-UGGCC-AUUCGA----UU---GGCUUUCUCCC-------UCCCGCCUCUGUAAACAUU
....(((((((((....)))......(((((--.(((((.....)))))-.))))-))))))----).---(((........-------....)))............ ( -19.60)
>consensus
CUCCAUUGGAGUUCCUCGACACGUUCUGGCC__CGAGUUCACUAAACUCGUGGCCGAUGCGAUCAGUU___GGCUGACUCCCCCCUCUCUCUAGCCUUUAUAAACAUU
.......((((((((..(((.(((..((((((.((((((.....))))))))))))..)))....)))...))..))))))........................... (-20.15 = -22.27 +   2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:21 2006