| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,758,161 – 22,758,260 |
| Length | 99 |
| Max. P | 0.656225 |
| Location | 22,758,161 – 22,758,260 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 94.04 |
| Mean single sequence MFE | -20.01 |
| Consensus MFE | -18.64 |
| Energy contribution | -18.42 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22758161 99 - 27905053 AGAGCACCAAAGAAACUGAACACCA---AAAAAAAACCAGUCGCUUUAUUUGCAGUUACCCAACGGUAGCCAAAAGAGCUGGGGUGAAGAAUUACCAGCCGA ...(((..((((..((((.......---.........))))..))))...))).((((((....)))))).....(.(((((............)))))).. ( -22.39) >DroSec_CAF1 47793 98 - 1 AGAGCACCAAAGAAACUGAACACCA---AAAAAAAACCAGUCGCUUUAUUUGCAGUUACCCAACGGUAGCGAAAAGAGCUGGGGC-AAGAAUUAACAGCCAA ...(((..((((..((((.......---.........))))..))))...))).((((((....)))))).....(.((((....-.........))))).. ( -19.91) >DroSim_CAF1 47915 101 - 1 AGAGCACCAAAGAAACUGAACACCACAAAAAAAAAACCAGUCGCUUUAUUUGCAGUUACCCAACGGUAGCCAAAAGAGUUGGGGC-AAGAAUUAACAGCCAA .(.((...((((..((((...................))))..)))).(((((.....((((((.............))))))))-)))........))).. ( -17.73) >consensus AGAGCACCAAAGAAACUGAACACCA___AAAAAAAACCAGUCGCUUUAUUUGCAGUUACCCAACGGUAGCCAAAAGAGCUGGGGC_AAGAAUUAACAGCCAA ...(((..((((..((((...................))))..))))...))).((((((....)))))).....(.((((..............))))).. (-18.64 = -18.42 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:20 2006