Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,757,717 – 22,757,867 |
Length | 150 |
Max. P | 0.715645 |
Location | 22,757,717 – 22,757,833 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.09 |
Mean single sequence MFE | -36.27 |
Consensus MFE | -23.83 |
Energy contribution | -26.20 |
Covariance contribution | 2.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.65 |
Structure conservation index | 0.66 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22757717 116 + 27905053 ----UUGAUUGUUGUUGCAUGCGAAAUGCUUCGUUUUGCUUGGGCAUAAUGGUAAUCGUAUGGUAAUUGCCACAGUGAAGCGAAUUGCAUUUCAAGUUGCACGUCUGUUGCGGCAUGAAG ----.............(((((((((((((((((((..((..((((..((.(((....))).))...))))..))..)))))))..)))))))..((.(((....))).)).)))))... ( -37.20) >DroSec_CAF1 47345 116 + 1 CCACUUGAUUG----UGCAUGCGAAAUGCUUCGUUUUGCUUGGGCGUAAUGGUAAUCGUAUGGUAAUUGCCGCACUGAAGCGAAUUGCAUUUCGAGUUGCACGUCUGUUGGGGCAUGAAG (((...(((.(----((((..((((((((.....(((((((.((.((...((((((..(...)..)))))))).)).)))))))..))))))))...))))))))...)))......... ( -39.30) >DroSim_CAF1 47469 117 + 1 CCACUUGAUUG---UUGCAUGCGAAAUGCUUCGUUUUGCUUGGGCGUAAUGGUAAUCGUAUGGUAAUUGCUGCAGUGAAGCGAAUUGCAUUUCGAGUUGCACGUCUGUUGGGGCAUGAAG (((...(((.(---(.(((..(((((((((((((((..((..((((..((.(((....))).))...))))..))..)))))))..))))))))...))))))))...)))......... ( -36.90) >DroAna_CAF1 48039 116 + 1 CCACUUGAUCU---GGGCAUGCAAAAUUGCUCGCUUUGCUUC-GCAUAAUGGUUAUCUUAUGGUAAUUGGUGGAGUGAAACGAAUUGCAUUUGGAGUUGCACGACUCAUGGGCCAUGAAG ........(((---((.(((((((......(((.((..((((-((.....(((((((....))))))).))))))..)).))).))))))...(((((....)))))...).))).)).. ( -31.70) >consensus CCACUUGAUUG___UUGCAUGCGAAAUGCUUCGUUUUGCUUGGGCAUAAUGGUAAUCGUAUGGUAAUUGCCGCAGUGAAGCGAAUUGCAUUUCGAGUUGCACGUCUGUUGGGGCAUGAAG ................(((..(((((((((((((((((((..((((..((.(((....))).))...))))..)))))))))))..))))))))...)))..(((......)))...... (-23.83 = -26.20 + 2.37)
Location | 22,757,753 – 22,757,867 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.62 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -20.76 |
Energy contribution | -22.70 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.08 |
Mean z-score | -1.95 |
Structure conservation index | 0.65 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22757753 114 - 27905053 ------AAGUGGGCGUGGCACCCGGCCAUUCGACAUGCCACUUCAUGCCGCAACAGACGUGCAACUUGAAAUGCAAUUCGCUUCACUGUGGCAAUUACCAUACGAUUACCAUUAUGCCCA ------...(((((((((((..(((....)))...))))))....(((((((...((..((((........))))..)).......)))))))......................))))) ( -32.80) >DroSec_CAF1 47381 114 - 1 ------UAGUGGGCGUGGCACCCGGCCAUUCGCCAUGCCACUUCAUGCCCCAACAGACGUGCAACUCGAAAUGCAAUUCGCUUCAGUGCGGCAAUUACCAUACGAUUACCAUUACGCCCA ------...(((((((((((...(((.....))).))))))....((((......((..((((........))))..))((......))))))......................))))) ( -34.70) >DroSim_CAF1 47506 114 - 1 ------UAGUGGGCGUGGCACCCGGCCAUUCGCCAUGCCACUUCAUGCCCCAACAGACGUGCAACUCGAAAUGCAAUUCGCUUCACUGCAGCAAUUACCAUACGAUUACCAUUACGCCCA ------...(((((((((((...(((.....))).))))))....(((.......((..((((........))))..))((......)).)))......................))))) ( -31.30) >DroAna_CAF1 48076 118 - 1 AUUACCAAAGAGGCGUGGCAG-CGCACAUUGGCCAUGCCCCUUCAUGGCCCAUGAGUCGUGCAACUCCAAAUGCAAUUCGUUUCACUCCACCAAUUACCAUAAGAUAACCAUUAUGC-GA ...........((.((((.((-((..(((.(((((((......))))))).))).....((((........))))...)))))))).))........((((((........))))).-). ( -28.80) >consensus ______AAGUGGGCGUGGCACCCGGCCAUUCGCCAUGCCACUUCAUGCCCCAACAGACGUGCAACUCGAAAUGCAAUUCGCUUCACUGCAGCAAUUACCAUACGAUUACCAUUACGCCCA ..........((((((((((...(((.....))).))))))....((((......((..((((........))))..))((......))))))......................)))). (-20.76 = -22.70 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:17 2006