Locus 8524

Sequence ID 3R_DroMel_CAF1
Location 22,756,227 – 22,756,328
Length 101
Max. P 0.734130
window13701

overview

Window 1

Location 22,756,227 – 22,756,328
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 72.70
Mean single sequence MFE -20.12
Consensus MFE -7.88
Energy contribution -7.57
Covariance contribution -0.31
Combinations/Pair 1.29
Mean z-score -2.57
Structure conservation index 0.39
SVM decision value 0.43
SVM RNA-class probability 0.734130
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22756227 101 + 27905053
CUAUAUUUAUGCCAAAAAGCGUGUGUAACGAGCAAAUGAUGUGUUAUAUACGAUGACACUUUAAUGUCCAUCAAGGACAGCUGAAGUGGAGAAAAAAAAAG
...................(((((((((((..(....)...)))))))))))....(((((((.(((((.....)))))..)))))))............. ( -27.10)
>DroSec_CAF1 45891 87 + 1
GUAUAUUUAUGUCAAAAAGCUUGUGUAACGAGCAAAUGAUUGGUUAUAUACGAUGACACUUUAAUGCCCAUUAAGGACA--------------AAAAAAAA
((((((....((((....(((((.....)))))...)))).....)))))).......(((((((....)))))))...--------------........ ( -16.90)
>DroSim_CAF1 45996 83 + 1
GUAUAUUUAUGCCAAGAAGCGUGUGUAACGAGCAAAUGAUUGGUUAUAUACGAUGACACCUUAAUGCCCAUCAAGGACA--------------AA----AA
((((((....(((((....(((.(((.....))).))).))))).)))))).......((((.((....)).))))...--------------..----.. ( -15.90)
>DroAna_CAF1 46468 79 + 1
---UACGUAU-----AAAGUAUAUGUAACGAGGAAAUGAUGGGUUAAAUAUGGCGACAGUUUAAUGCCUAUCAAGGCCA--------------AGUGAGAA
---(((((((-----(...))))))))((..((...(((((((((((((.((....)))))))..))))))))...)).--------------.))..... ( -20.60)
>consensus
GUAUAUUUAUGCCAAAAAGCGUGUGUAACGAGCAAAUGAUGGGUUAUAUACGAUGACACUUUAAUGCCCAUCAAGGACA______________AAAAAAAA
...................((((((((((.............))))))))))............((.((.....)).))...................... ( -7.88 =  -7.57 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:15 2006