Locus 8523

Sequence ID 3R_DroMel_CAF1
Location 22,756,008 – 22,756,110
Length 102
Max. P 0.959865
window13700

overview

Window 0

Location 22,756,008 – 22,756,110
Length 102
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 74.16
Mean single sequence MFE -23.66
Consensus MFE -15.25
Energy contribution -15.75
Covariance contribution 0.50
Combinations/Pair 1.10
Mean z-score -1.96
Structure conservation index 0.64
SVM decision value 1.51
SVM RNA-class probability 0.959865
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22756008 102 + 27905053
-------GCAAAAUGUUUCGAAAAUACUUUCACCAA------AAAGCCGUGACAAUGUCACUGCCAGGCAGCUGAAAACGAGAGCCAAA-UAAUUUGGCUGACAGCCAAAGAGCAA
-------((.................(((((.....------...((.(((((...))))).))(((....))).....))))).....-...((((((.....))))))..)).. ( -23.00)
>DroSec_CAF1 45672 102 + 1
-------GCAGAAUGUUUCGAAAAUACUUUCACCGA------AAAGGCGUGACAAUGUCACUACCAGGCAGCUGAAAACGAGAGCCAAA-UAAUUUGGCUGACAGCCAAAUAGCUA
-------((......(((((.............)))------)).((((((((...)))))...(((....))).........)))...-..(((((((.....))))))).)).. ( -23.62)
>DroSim_CAF1 45777 102 + 1
-------GCAAAAUGUUUCAAAAAUACUUUCACCGA------AAAGGCGUGACAAUGUCACUGCCAGGCAGCUGAAAACGAGAGCCAAA-UAAUUUGGCUGACAGCCAAAUAGCUA
-------((....(((((..................------...((((((((...))))).))).(((..((.......)).))))))-))(((((((.....))))))).)).. ( -24.10)
>DroMoj_CAF1 65011 105 + 1
GUGUAUAUCAA----------CAAAGAUAACAACAAAUUGUACAGUGCGUGACAAUGUCAGUGCCAG-CUUGUGAAAACGAGAGCAAAACUAAUUUGGCAUCACGCCAAAUCAAAA
.(((.((((..----------....))))))).....(((....(.((((((...(((((((((...-(((((....))))).)))........)))))))))))))....))).. ( -23.90)
>consensus
_______GCAAAAUGUUUCGAAAAUACUUUCACCAA______AAAGGCGUGACAAUGUCACUGCCAGGCAGCUGAAAACGAGAGCCAAA_UAAUUUGGCUGACAGCCAAAUAGCAA
.......((....................................((((((((...)))))...(((....))).........)))......(((((((.....))))))).)).. (-15.25 = -15.75 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:14 2006