Locus 8522

Sequence ID 3R_DroMel_CAF1
Location 22,755,468 – 22,755,577
Length 109
Max. P 0.777458
window13699

overview

Window 9

Location 22,755,468 – 22,755,577
Length 109
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 77.95
Mean single sequence MFE -17.77
Consensus MFE -14.11
Energy contribution -13.90
Covariance contribution -0.21
Combinations/Pair 1.19
Mean z-score -1.39
Structure conservation index 0.79
SVM decision value 0.55
SVM RNA-class probability 0.777458
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22755468 109 + 27905053
AACUCAUAAUUGGAUUACUCCAAAUACCCAUAAUUGGCAUCCGUAGGCCAGCUCUAAAUUAGCGCAAAAAGCGAAAAAAAAUCGAGAGAAUAAACGGAAAUGUGAAAAA--
...(((((.(((((....)))))....((....(((((........)))))((((..(((..(((.....)))......)))..)))).......))...)))))....-- ( -21.30)
>DroSec_CAF1 45143 100 + 1
AACUCAUAAUUGGAUUACUCCAAAUUCCCAUAAUUGGCAUCCGUAGGCCAGCUCUAAAUUAGCGCAA---------AAAAAGCGAGAAAAUAAACGGAAAUGUGAAAAA--
...(((((.(((((....))))).((((.....(((((........))))).......((..(((..---------.....)))..)).......)))).)))))....-- ( -19.70)
>DroAna_CAF1 44967 93 + 1
GUCUCAUAAUUGGAUUACUCCAAAUUCUCAUAAUUGGCACCCGUAGGCCGGCUCUAAAUUGGCAAAU------------------AAGAAUUAACGGAAAUAUAAAAAAGC
.........(((((....))))).((((..((((((((........))).(((.......)))....------------------...)))))..))))............ ( -12.30)
>consensus
AACUCAUAAUUGGAUUACUCCAAAUUCCCAUAAUUGGCAUCCGUAGGCCAGCUCUAAAUUAGCGCAA_________AAAAA_CGAGAGAAUAAACGGAAAUGUGAAAAA__
...(((((.(((((....))))).((((......((((........))))(((.......)))................................)))).)))))...... (-14.11 = -13.90 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:13 2006