Locus 8521

Sequence ID 3R_DroMel_CAF1
Location 22,754,842 – 22,754,948
Length 106
Max. P 0.852678
window13698

overview

Window 8

Location 22,754,842 – 22,754,948
Length 106
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 75.02
Mean single sequence MFE -21.80
Consensus MFE -6.39
Energy contribution -6.37
Covariance contribution -0.03
Combinations/Pair 1.20
Mean z-score -2.64
Structure conservation index 0.29
SVM decision value 0.79
SVM RNA-class probability 0.852678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22754842 106 - 27905053
UUAUUAUU-GCCGAUAAAGCGGCUAAAUAAUGUGGCUGAAAAAUGCUUAAGAUUUGACAGGCAGUUAGUCUUAGGCAAGUCUAAGGCAA-GAUAAAAUCGACAGCAAA
.(((((((-((((......))))..)))))))..((((.....(((((((((((.(((.....)))))))))))))).((((......)-)))........))))... ( -30.20)
>DroVir_CAF1 68674 90 - 1
UUAUUAUU-GCAGAUAAAGCUGCAAAAUUACGCGCAU--AAAAUGCAAAAGAUUUGACAGCCAGUCAGCUUAA--------------AA-GAUUGCAGCGAUUACGAA
........-.........(((((((..(((.((((((--...))))........((((.....)))))).)))--------------..-..)))))))......... ( -18.80)
>DroGri_CAF1 74683 92 - 1
UUAUUAUUUUCAGAUUGAACUGCUAAAUAAUGCACAU--AAAAUCCAAAAGAUUUGACAGGCAGUCAGCUUAA--------------AACGAUUACCACGAUUACCAA
..((..((((.((.((((.(((((.....((....))--.(((((.....)))))....))))))))))).))--------------))..))............... ( -10.50)
>DroSec_CAF1 44550 95 - 1
UUAUUAUU-GCCAAUAAAGCGGCUAAAUAAUGUGGCUGAAAAAUGCUUAAGAUUUGACAGGCAGUUAGUCUUAGG-----------CAA-GAUAAAAUCGACAGCAAA
.(((((((-(((........)))..)))))))..((((.....(((((((((((.(((.....))))))))))))-----------)).-(((...)))..))))... ( -25.50)
>DroSim_CAF1 44677 95 - 1
UUAUUAUU-GCCAAUAAAGCGGCUAAAUAAUGUGGCUGAAAAAUGCUUAAGAUUUGACAGGCAGUUAGUCUUAGG-----------CAA-GAUAAAAUCGACAGCAAA
.(((((((-(((........)))..)))))))..((((.....(((((((((((.(((.....))))))))))))-----------)).-(((...)))..))))... ( -25.50)
>DroAna_CAF1 44358 93 - 1
UUAUUAUU-GCAGAUAAAACUGCGAAGUAAUGAGCCUGAA-AAUGCUUAAAAUUUGACAGGCGGUUAGUCUUAGU-----------CAA-GAUAAAGUC-AUAAAAAA
.((((.((-((((......))))))))))(((((((((.(-(((.......))))..))))).....(((((...-----------.))-)))....))-))...... ( -20.30)
>consensus
UUAUUAUU_GCAGAUAAAGCGGCUAAAUAAUGUGCCUGAAAAAUGCUUAAGAUUUGACAGGCAGUUAGUCUUAGG___________CAA_GAUAAAAUCGACAACAAA
.((((((..((((......))))...)))))).....................(((((.....)))))........................................ ( -6.39 =  -6.37 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:12 2006