Locus 8520

Sequence ID 3R_DroMel_CAF1
Location 22,747,877 – 22,747,969
Length 92
Max. P 0.932269
window13697

overview

Window 7

Location 22,747,877 – 22,747,969
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 75.89
Mean single sequence MFE -20.90
Consensus MFE -14.78
Energy contribution -14.18
Covariance contribution -0.60
Combinations/Pair 1.29
Mean z-score -1.76
Structure conservation index 0.71
SVM decision value 1.22
SVM RNA-class probability 0.932269
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22747877 92 - 27905053
AGCG-AAUUAAUAGCAC---UUUUUGCUUGCUUUUCAUUUUGCCUUUGCUCUCAGCUCGACAACGACGACGUCAUUGUUGUCACUUUUUGCCGCUG
((((-((.....((((.---....)))).....))).....((....((.....))..((((((((.(....).)))))))).......)).))). ( -19.10)
>DroSec_CAF1 37728 76 - 1
GGCG-AAUUAAUAGCAC---UUUUUGCUUGGUUUUCGUUUUGCCUU----------------ACGACGACGUCAUUGUUGUCACUUUUUGCCGCGG
((((-((.....((((.---....)))).(((.........)))..----------------..(((((((....)))))))....)))))).... ( -19.10)
>DroSim_CAF1 37837 76 - 1
GGCG-AAUUAAUAGCAC---UUUUUGCUUGGUGUUCAUUUUGCCUU----------------ACGACGACGUCAUUGUUGUCACUUUUCGCCGCGG
((((-((.....(((((---(........))))))...........----------------..(((((((....)))))))....)))))).... ( -22.70)
>DroYak_CAF1 39940 88 - 1
GGCG-AAUUAAUAGCAC---UUUUUGCUUGGCUUUUAUUUUGCUUU-GCUCUCCGCUCG---ACGACGACGUCAUUGUUGUCACUUUUCGCCGCUG
((((-((.....(((..---.....((..(((.........)))..-)).....))).(---(((((((.....))))))))....)))))).... ( -25.00)
>DroAna_CAF1 37239 88 - 1
GUCAAAAUUAAUAGCACCAGUUUUUGUUUUGUUUUUAUU-CGUUUU-GUUCUGAAAC------UGGCGACGUCAUCGUUGUCACUUUCCGACGGUG
..((((((.(((((...(((........)))...)))))-.)))))-).((.((((.------((((((((....)))))))).)))).))..... ( -18.60)
>consensus
GGCG_AAUUAAUAGCAC___UUUUUGCUUGGUUUUCAUUUUGCCUU_G_UCU__________ACGACGACGUCAUUGUUGUCACUUUUCGCCGCUG
(((.........((((........))))....................................(((((((....))))))).......))).... (-14.78 = -14.18 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:11 2006