| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,746,766 – 22,746,863 |
| Length | 97 |
| Max. P | 0.795269 |
| Location | 22,746,766 – 22,746,863 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 73.34 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -12.90 |
| Energy contribution | -14.29 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22746766 97 + 27905053 CCACCACUCGAUGAACACGAAAUUGGAGCGCACGCUUCAUUCGCCCCA-AACGGCGAGCCAAUAAAAGCUCCA----CGUACGCAUAGCA-AGUGUAGUUAAA ....((((..(((...(((....((((((..........((((((...-...)))))).........))))))----)))...)))....-))))........ ( -23.71) >DroSec_CAF1 36596 97 + 1 CCCCCGCUCGAUGAACACGAAAUUGGAGCGCACGCUUCAUUCGCCGGC-AACGGUGAGCCGAAAAGAGCUCCA----CGUUCGCAUAGCA-AGUGUAGUUGAA .......(((((..(((((((..((((((...(..(((.(((((((..-..)))))))..)))..).))))))----..)))((...)).-.)))).))))). ( -34.50) >DroSim_CAF1 36705 97 + 1 CACCCACUCGAUGAACACGAAAUUGGAGCGCACGCUUCAUUCGCCGGC-AACGGUGAGCCGAUAAAAGCUCCA----CGUUCGCAUAGCA-AGUGUAGUUGAA .......(((((..(((((((..((((((.......((.(((((((..-..)))))))..)).....))))))----..)))((...)).-.)))).))))). ( -33.50) >DroEre_CAF1 39039 98 + 1 CCCCCACUCAAUGAACGCGAAAUUGGAGCGCACGCUUCGUUCGCCCCA--ACGGUGGGCCAAUAAAAGCUCCAC--ACGUCCGCAUUACA-AGUGUAGUUGAA .......(((((..(((((((...(((((....))))).)))))....--(((((((((........)).))))--.)))..........-.))...))))). ( -27.70) >DroYak_CAF1 38704 103 + 1 CCGCCACUCAAUGAACACGGAAUUGGAGCGCACGCUUCAUUCGCCCCAAAACGUUGGGGCGAUAAAAGCUCCACACACGUUCACAUAGCAUAGUGUAGUUGAA .......(((((..(((((((..((((((....)))))).(((((((((....))))))))).......)))......(((.....)))...)))).))))). ( -34.70) >DroMoj_CAF1 51122 76 + 1 ---------------CACAAAAUUUAGACACACGCAUCAUUUGGUC---AACCUUUG--CGAUAAAAUGUCAA------UGCGAAGCACA-AAGGUAUAUAUA ---------------...........(((.((.........)))))---.(((((((--.(((.....)))..------(((...)))))-)))))....... ( -11.00) >consensus CCCCCACUCGAUGAACACGAAAUUGGAGCGCACGCUUCAUUCGCCCCA_AACGGUGAGCCGAUAAAAGCUCCA____CGUUCGCAUAGCA_AGUGUAGUUGAA ....((((..(((...(((....((((((..........((((((.......)))))).........))))))....)))...))).....))))........ (-12.90 = -14.29 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:11 2006